Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0973
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    29   0.69 
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    27   1.6  
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    26   4.8  
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ...    25   8.5  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    25   8.5  

>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
 Frame = +2

Query: 116 TKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPN--GALDEVFKKYCDKSAQ 289
           T+N+   K+  ++ ++++F  CL    +LN LK+ + +   +   A  +V  +Y  KS  
Sbjct: 40  TQNDGSKKLSSIDGSIKSFAACLH---ELNRLKSRVGDRIRDYASASKQVQNEYHQKSNH 96

Query: 290 LKGCISSVLQ 319
           L+   + VL+
Sbjct: 97  LREKFAQVLE 106


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -2

Query: 554 QQGSSYXRIPQWGSSVSNLKSMS*DSQSFAGSTQGRLP 441
           Q+ SS  R+  + S++S+LKS    SQ+  GST   +P
Sbjct: 376 QRLSSLNRVASFESNISSLKSALYASQNSDGSTSNPVP 413


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
 Frame = +2

Query: 410 KDGDRIALF---IAEGGPECFQQK--TENLKTCFLNLKQSFPTVESXNNLSLVEKCAKVD 574
           +D +RI  +   +AEG  +  Q+    E +KT     K   P   + N  +L  K  KVD
Sbjct: 130 EDDNRIPFYDLDVAEGAEDDLQEDFHVEGMKTKS-GRKIQRPVAYNPNATALKRKSRKVD 188

Query: 575 XMTXCIV 595
            +T C V
Sbjct: 189 MVTLCSV 195


>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -1

Query: 558 FSTRLKLLXDSTVGKLCFKFKKHVLRFSVFCWKHSGPPSAMNKAIRSP 415
           F++RL+ L D        K     +  S+  W+   PPS ++ + +SP
Sbjct: 287 FNSRLQKLVDDPNSLKAIKTSTQNVGRSIVYWEKEFPPSNIDSSPQSP 334


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = +2

Query: 287 QLKGCISSVLQGVRPCVG---NDYANHINDAQNSTNQLIDFVCYKD 415
           +L   I+  L  ++P +    N Y  HI  +  +  +L  F CYK+
Sbjct: 53  KLTKAITEYLSNLKPQLSKQENIYVKHIKSSNEAKTELEIFNCYKE 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,226,578
Number of Sequences: 5004
Number of extensions: 41534
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)