BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0973 (600 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_21904| Best HMM Match : Vinculin (HMM E-Value=0) 31 0.94 SB_46239| Best HMM Match : Phage_integrase (HMM E-Value=0.24) 30 1.6 SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27) 29 2.9 SB_9680| Best HMM Match : Ank (HMM E-Value=4e-20) 28 5.0 SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6 SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10) 27 8.8 >SB_21904| Best HMM Match : Vinculin (HMM E-Value=0) Length = 999 Score = 30.7 bits (66), Expect = 0.94 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Frame = +2 Query: 107 SQCTKNNAEDKV-PEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPNGALDEVFKKYCDKS 283 + CT++N D++ E A + + L + K ++A P G LD+ +K C K+ Sbjct: 327 ADCTRDNTRDRIIAECNAVRQALQDLLSEYMSHAGGK---KKAVPGGPLDKAIEKMCSKT 383 Query: 284 AQLKG 298 + L+G Sbjct: 384 SGLRG 388 >SB_46239| Best HMM Match : Phage_integrase (HMM E-Value=0.24) Length = 364 Score = 29.9 bits (64), Expect = 1.6 Identities = 9/21 (42%), Positives = 14/21 (66%) Frame = -2 Query: 383 WYCFGHH*CGSHSRCLHKDAR 321 W+C+G+ G SRC+H+ R Sbjct: 302 WFCWGYFSYGESSRCIHRGVR 322 >SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27) Length = 601 Score = 29.1 bits (62), Expect = 2.9 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Frame = +2 Query: 62 GVXADDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVDLNV-LKTEIEE 229 G+ D +S I +V N A D + EVE A R L D N LKT + E Sbjct: 299 GIGVDLYSIINTLVECDKKSNQAADAIKEVEKAEREVSKSETELRDFNTELKTFMRE 355 >SB_9680| Best HMM Match : Ank (HMM E-Value=4e-20) Length = 1243 Score = 28.3 bits (60), Expect = 5.0 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = -1 Query: 249 SAPFGLASSISVFRTFKSTSPLRQFP 172 S PFG+ S+ S+ + F S + L++FP Sbjct: 458 SLPFGIQSASSLVKLFLSNNKLKEFP 483 >SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 333 Score = 27.9 bits (59), Expect = 6.6 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = +2 Query: 173 GNCLKGLVDLNVLKTEIEE 229 GNCLKG+V++NV IE+ Sbjct: 277 GNCLKGIVNVNVSPNIIEQ 295 >SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10) Length = 1029 Score = 27.5 bits (58), Expect = 8.8 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Frame = +3 Query: 231 PSQTVHSTRFSRSTVTRVLN*KA-VSARCCRACVLV*ATTMRTTSMMPKT 377 P+ + S + + K+ + RCCR CV TT +TT + K+ Sbjct: 13 PNAAIESQELTHQQILNNREGKSCTTTRCCRRCVGKKITTQKTTGAVDKS 62 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,287,947 Number of Sequences: 59808 Number of extensions: 339582 Number of successful extensions: 875 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 832 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 875 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1451595000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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