Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0973
         (600 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g12370.1 68418.m01455 exocyst complex component Sec10-related...    32   0.25 
At4g15830.1 68417.m02408 expressed protein                             32   0.33 
At1g24610.1 68414.m03096 SET domain-containing protein low simil...    27   7.2  
At5g41050.1 68418.m04990 expressed protein                             27   9.5  
At4g38070.1 68417.m05377 bHLH family protein contains Pfam profi...    27   9.5  
At4g24010.1 68417.m03450 cellulose synthase family protein simil...    27   9.5  
At4g23530.1 68417.m03391 expressed protein                             27   9.5  
At1g71210.1 68414.m08217 pentatricopeptide (PPR) repeat-containi...    27   9.5  

>At5g12370.1 68418.m01455 exocyst complex component Sec10-related
           low similarity to SP|O00471 Exocyst complex component
           Sec10 (hSec10) {Homo sapiens}
          Length = 858

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
 Frame = +2

Query: 143 PEVEAALRTFGNCLKGLVD--------LNVLKTEI--EEAKPNGALDEVFKKYCDKSAQL 292
           PEV+  L  F +  K LVD        LN LK E+  +++K    L E      +  A+L
Sbjct: 87  PEVDGLLSLFKDACKELVDLRKQVDGRLNTLKKEVSTQDSKHRKTLTEGVDGLFESFARL 146

Query: 293 KGCISSVLQGVRPCVGNDYANHINDAQNSTNQLIDFVCY 409
            G ISSV Q     +G D+    +  + + +Q ID + Y
Sbjct: 147 DGRISSVGQTAAK-IG-DHLQSADAQRETASQTIDLIKY 183


>At4g15830.1 68417.m02408 expressed protein
          Length = 296

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 18/70 (25%), Positives = 32/70 (45%)
 Frame = +2

Query: 74  DDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPNGALD 253
           ++  +   ++ +Q   +   DK+PE   A R+  N L      N      EE    G+  
Sbjct: 217 NEMEEFGMILLAQMAADQLSDKLPEAREAARSMVNSLFEKFTWN------EEEDEEGSKQ 270

Query: 254 EVFKKYCDKS 283
           E +KK+C+K+
Sbjct: 271 EAWKKFCEKN 280


>At1g24610.1 68414.m03096 SET domain-containing protein low
           similarity to SP|Q43088 Ribulose-1,5 bisphosphate
           carboxylase/oxygenase large subunit N-
           methyltransferase, chloroplast precursor (EC 2.1.1.127)
           {Pisum sativum}; contains Pfam profile PF00856: SET
           domain
          Length = 476

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = -1

Query: 255 SSSAPFGLASSISVFRT 205
           S+ APFG+A+ I+VFRT
Sbjct: 392 SAVAPFGIANEIAVFRT 408


>At5g41050.1 68418.m04990 expressed protein
          Length = 172

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 21/82 (25%), Positives = 33/82 (40%)
 Frame = +2

Query: 191 LVDLNVLKTEIEEAKPNGALDEVFKKYCDKSAQLKGCISSVLQGVRPCVGNDYANHINDA 370
           L+ LN L  +   AKPNG +  +   YCD  +       S      P V        N A
Sbjct: 14  LLSLNSLSLKHSSAKPNGKITVMGLVYCDVCSNNSFSNHSYF---IPGVEVRIICRFNSA 70

Query: 371 QNSTNQLIDFVCYKDGDRIALF 436
            + T ++I F   +  + + L+
Sbjct: 71  SSRTREMITFSANRTTNELGLY 92


>At4g38070.1 68417.m05377 bHLH family protein contains Pfam profile:
           PF00010 helix-loop-helix DNA-binding domain; PMID:
           12679534; putative bHLH131 transcription factor
          Length = 1513

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +2

Query: 461 FQQKTENLKTCFLNLKQSFPTVESXNNLSLVEKCAKVD 574
           +++  E  + C + L++    +ES +N ++ E C+KVD
Sbjct: 595 YKEMLEESEKCRVLLEEQISQLESDSNENIRELCSKVD 632


>At4g24010.1 68417.m03450 cellulose synthase family protein similar
           to Zea mays cellulose synthase-5 [gi:9622882], -4
           [gi:9622880]
          Length = 770

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 113 CTKNNAEDKVPEVEAALRTFGNCLKG-LVDLNVLKTEIEE 229
           C KNN +D+ PEV  +  +     +   +  N+LK E+E+
Sbjct: 166 CKKNNVQDRSPEVYFSSESHSRSDEAENLKTNILKCEVEQ 205


>At4g23530.1 68417.m03391 expressed protein
          Length = 396

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 501 FKKHVL-RFSVFCWKHSGPPSAMNKAIRSPS 412
           F+KHV  RFS      S PPS+ + A+  PS
Sbjct: 39  FQKHVAERFSDLITSPSPPPSSSSSAVSQPS 69


>At1g71210.1 68414.m08217 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 879

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = +2

Query: 44  ITIFAAGVXADDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEI 223
           IT F   V   +  +   V  +     N EDK+PE+++     G    G +D+ V    +
Sbjct: 740 ITAFIGNVLLHNAMKSKGVYEAWTRMRNIEDKIPEMKSLGELIG-LFSGRIDMEVELKRL 798

Query: 224 EE 229
           +E
Sbjct: 799 DE 800


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,789,518
Number of Sequences: 28952
Number of extensions: 227858
Number of successful extensions: 601
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)