Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0970
         (642 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6LMM9 Cluster: Putative uncharacterized protein precur...    34   3.4  
UniRef50_Q6NR30 Cluster: RE38958p; n=2; Sophophora|Rep: RE38958p...    33   7.7  

>UniRef50_A6LMM9 Cluster: Putative uncharacterized protein
           precursor; n=1; Thermosipho melanesiensis BI429|Rep:
           Putative uncharacterized protein precursor - Thermosipho
           melanesiensis BI429
          Length = 159

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 12/29 (41%), Positives = 22/29 (75%)
 Frame = -3

Query: 262 IRYYSILSVIYFICRIIQDVHGVQVRFRI 176
           I Y+ +LS+ Y + RI+++++ + VRFRI
Sbjct: 64  ILYFLLLSIFYQLYRIVREIYSIDVRFRI 92


>UniRef50_Q6NR30 Cluster: RE38958p; n=2; Sophophora|Rep: RE38958p -
           Drosophila melanogaster (Fruit fly)
          Length = 512

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = -2

Query: 203 SWSSGAVSNPARSS*NCVVSLKTEPLLFSAINAQSYCNWAESF 75
           S SS + S+ A SS NC   LKTEP+L S  N     N+A ++
Sbjct: 271 SSSSSSSSSSASSSANCAKKLKTEPIL-SQYNQTERLNFANTY 312


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 564,184,172
Number of Sequences: 1657284
Number of extensions: 10636214
Number of successful extensions: 27289
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27284
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48126133708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)