Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0970
         (642 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    22   4.9  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           21   6.5  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   8.6  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    21   8.6  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   8.6  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/35 (22%), Positives = 20/35 (57%)
 Frame = +2

Query: 401 LDSVATAMREAENRRKWKPMVQRATKSFQGHDLQQ 505
           ++  A   R ++NRR  KP++++  ++   + L +
Sbjct: 22  IEMAAATKRVSDNRRSNKPIMEKRRRARINNSLNE 56


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 337 VERKRPASRPPNYWSDLITALTGLCCDR 420
           ++ KRP +  P   S L+T  + L C R
Sbjct: 44  IQSKRPLAPAPERTSVLVTNNSDLRCKR 71


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 260 PLLFNIICNLFHLPYYPRC 204
           P+L+NII + F   ++  C
Sbjct: 350 PILYNIISSKFRSGFFKLC 368


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 540 FDLSGISLNTRRLSL*LKMSFI 605
           F L G S+N RR+S+ + ++ +
Sbjct: 110 FGLLGYSINYRRISIFVNLAIL 131


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 30  KTHRSCPVPRSRSRFKALSP 89
           K +R+ P P  R +  +LSP
Sbjct: 261 KNNRASPYPMQRPKSASLSP 280


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,421
Number of Sequences: 336
Number of extensions: 2664
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)