Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0970
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    26   4.0  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    26   5.3  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    26   5.3  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    25   9.3  

>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 432 PKTEGNGSRWYKEPRRAFRDTTFS 503
           P TE   +RWY+ P    RD+ +S
Sbjct: 196 PYTEYVSTRWYRAPELLLRDSYYS 219


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +1

Query: 337 VERKRPASRPPNYWSDLITALTGLCCDRHERSRKPKEMEADGTKSHEELSGTRP 498
           V++K  +S  P   +  +T ++ +  ++  +S KPK  E  G  SH+      P
Sbjct: 434 VDKKHQSSSVPTLPN--LTNISRVLSNKTSKSAKPKRSERTGLLSHQSTLAPEP 485


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 418 RHERSRKPKEMEADGTKSHEELS 486
           RH+RS +P   EA     HE  S
Sbjct: 42  RHDRSERPSSREAGDRSRHERFS 64


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 345 EKTCQPATKLLVRSDNCAHWTLL 413
           +K C     LL++  NC+ WT L
Sbjct: 817 DKECDDFVDLLIQKANCSVWTRL 839


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,338,192
Number of Sequences: 5004
Number of extensions: 45393
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)