Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0970
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0450 - 5840015-5840055,5840635-5840977,5841326-5841537,584...    29   3.1  
03_05_0703 - 26942117-26942221,26943765-26945579                       29   3.1  
01_06_1464 + 37537218-37537387,37537738-37537897,37539521-375397...    29   3.1  
10_08_0147 + 15218150-15218401,15218569-15218643,15219099-152192...    29   4.1  
10_02_0037 - 4441440-4443242                                           27   9.6  
02_05_0973 + 33209385-33209456,33210517-33210721,33210810-332109...    27   9.6  

>04_01_0450 -
           5840015-5840055,5840635-5840977,5841326-5841537,
           5842381-5842477
          Length = 230

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +1

Query: 319 LTVVGKVERKRPASRPPNYWSDLITALTGLCCDRHERSRKPKEMEADGTKSHEELSGT 492
           L+ + +V+   P+S PP  W  L +   G CC R       + M  +G +  EE +GT
Sbjct: 146 LSSISEVKGSSPSSLPP--WP-LSSVERGACCPRSHHDPSRQRMGGEGAQGGEE-AGT 199


>03_05_0703 - 26942117-26942221,26943765-26945579
          Length = 639

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 263 YPLLFNIICNLFHLPYYPRCSWSSGAVSNPARS 165
           +PLLF II  +F L YY    ++ GAV++P  S
Sbjct: 458 WPLLFAIISEVFGLKYYSTL-YNFGAVASPVGS 489


>01_06_1464 +
           37537218-37537387,37537738-37537897,37539521-37539787,
           37540541-37540646,37541411-37541678,37541915-37542020,
           37542891-37542950,37544349-37544445,37544613-37544803,
           37545518-37545583,37545879-37545944,37547510-37547583,
           37547910-37548000,37548079-37548236,37548424-37548466,
           37548621-37548686,37549113-37549190,37549361-37549453
          Length = 719

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +1

Query: 325 VVGKVERKRPASRPPNYWSDLITALTGLCCDRHERSRKPK 444
           +VGK  ++ PAS PP   SDL   L  L    H RS +P+
Sbjct: 8   LVGKAWKRTPASTPPRRRSDLPALLRRL----HSRSAQPE 43


>10_08_0147 +
           15218150-15218401,15218569-15218643,15219099-15219208,
           15219299-15219560
          Length = 232

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 107 HLSPRITTAPSLEKQHNFNWNAPD 178
           H+S RI  A  L +Q++FN+  PD
Sbjct: 101 HVSKRIRKAVELARQYHFNYTTPD 124


>10_02_0037 - 4441440-4443242
          Length = 600

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 266 LYPLLFNIICNLFHLPYYPRCSWSSGAVSNP 174
           LY LLF+I+  +F L YY    ++ G V++P
Sbjct: 464 LYTLLFSIVSEVFGLKYYATL-YNLGMVASP 493


>02_05_0973 +
           33209385-33209456,33210517-33210721,33210810-33210975,
           33211268-33211490,33211928-33212004,33212090-33212183,
           33212202-33212271,33212350-33212447,33212565-33212692,
           33212772-33212900,33213013-33213421,33213984-33214105,
           33214224-33214313,33215092-33215304,33215453-33215584,
           33216258-33216333,33216403-33216420
          Length = 773

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +1

Query: 370 NYWSDLITALTGLCCDRHERSRKPKEMEADGTKSHEELSGTRPSAMKYAT 519
           ++W  L++ L    C+ +  S      E  G  S E++SG+  S+    T
Sbjct: 415 HHWPSLLSGLDPFLCEENSNSDNTDCTEIVGDISQEDISGSSDSSCNGTT 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,015,167
Number of Sequences: 37544
Number of extensions: 293614
Number of successful extensions: 779
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)