Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0970
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53578| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_3479| Best HMM Match : PAH (HMM E-Value=4.7)                        28   5.6  
SB_47389| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   5.6  

>SB_53578| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1430

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -2

Query: 353 GLFLSTLPTTVNLSRLSAK*PFVII*HNKLYPLLFNIICNLFH 225
           G FLS  P T  L    A   F++I   K++PL   ++ +LFH
Sbjct: 853 GSFLSRTPITPRLMFREADLAFLMIKQEKMFPLA-ELLASLFH 894


>SB_3479| Best HMM Match : PAH (HMM E-Value=4.7)
          Length = 222

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 262 IRYYSILSVIYFICRIIQDVHGVQVRFRIRRV 167
           +RYY +    Y +C+++Q VH  QV   +R+V
Sbjct: 140 VRYYKVCVRYYKVCQVLQSVH--QVLQSVRQV 169


>SB_47389| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 341

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = -3

Query: 337 PCPPQSIFQG-CLLN-SP--SLLFSIINFIRYYSILSVIYFICRIIQDVHGVQVR 185
           P   +S+F G C  N SP  SL+ S++NF+    ++ ++YF    +   H  ++R
Sbjct: 174 PLYEKSVFDGACHFNISPWYSLISSVVNFVLPTIVMCLLYFRIYKVAHAHARRIR 228


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,238,530
Number of Sequences: 59808
Number of extensions: 343315
Number of successful extensions: 819
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)