Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0970
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p...    29   2.8  
AF043697-2|AAB97556.1|  820|Caenorhabditis elegans Patched relat...    29   2.8  
Z35663-10|CAA84731.1|  278|Caenorhabditis elegans Hypothetical p...    29   3.7  
Z79601-5|CAB01882.1|  450|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U64848-15|AAB04891.1|  384|Caenorhabditis elegans Hypothetical p...    28   6.5  

>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
            protein T20D3.11 protein.
          Length = 1843

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 340  LPCPPQSIFQGCLLNSPSLLFSIINFIRYYSILSVIYFICR 218
            LP P  S+F G L N     F  +  I Y   + VI F+C+
Sbjct: 1036 LPLPLMSLFWGNLSNPRPSKFFWVTMITYTECVIVIKFVCQ 1076


>AF043697-2|AAB97556.1|  820|Caenorhabditis elegans Patched related
           family protein 11 protein.
          Length = 820

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = -3

Query: 391 LSDLTNSLVAGWQVFSFL-PCPPQSIFQGCLLNSPSLLFSIINFIRYYSILSVIYFIC 221
           ++ LTN +  G     FL P P  S+F  CL  S +LL   +++I  Y+IL+ I F+C
Sbjct: 349 ITSLTNIIAFG---IGFLTPTPQMSLF--CLTASLALL---LDYIFTYTILAPIVFLC 398


>Z35663-10|CAA84731.1|  278|Caenorhabditis elegans Hypothetical
           protein T04A8.12 protein.
          Length = 278

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -3

Query: 283 LFSIINFIRYYSILSVIYFICRIIQDVHGVQV 188
           ++++   + Y ++LS I+F C +  D HG  +
Sbjct: 225 IYTLFALVEYSAVLSNIFFHCTLYYDFHGKNI 256


>Z79601-5|CAB01882.1|  450|Caenorhabditis elegans Hypothetical
           protein K09A9.3 protein.
          Length = 450

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 479 SSWLFV-PSASISFGFRLLSWRSQQSPVSAVIRSDQ*FGGRLAGLFL 342
           S+WLF+  +AS+SFG    S  S       V  S     G +AG FL
Sbjct: 384 STWLFIIVAASMSFGSGYFSGLSMMYTSKTVDPSKAQVAGMMAGFFL 430


>U64848-15|AAB04891.1|  384|Caenorhabditis elegans Hypothetical
           protein C50E3.13 protein.
          Length = 384

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = +1

Query: 295 YLADNLERLTVVGKVER-KRPASRPPNYWSDLITALTGLCCDRHERSRKPKEMEADGTKS 471
           Y  + + R T + ++ R K P  +  N W + +        +  ER R+P E      + 
Sbjct: 175 YERERIARKTFIWRLRRFKNPTDQSVNTWMETLNDRLNRVANSWERRREPHE---QAIRD 231

Query: 472 HEELSGTR 495
           +E L  TR
Sbjct: 232 YERLVATR 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,832,325
Number of Sequences: 27780
Number of extensions: 251060
Number of successful extensions: 654
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)