Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0970
         (642 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38810.1 68418.m04693 F-box family protein predicted proteins...    32   0.37 
At4g07530.1 68417.m01179 hypothetical protein                          30   1.5  
At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)...    29   3.5  
At4g35930.1 68417.m05111 expressed protein                             28   4.6  
At1g14710.2 68414.m01759 hydroxyproline-rich glycoprotein family...    28   4.6  
At1g14710.1 68414.m01758 hydroxyproline-rich glycoprotein family...    28   4.6  
At2g39210.1 68415.m04816 nodulin family protein similar to nodul...    28   6.1  
At5g35690.1 68418.m04267 expressed protein                             27   8.0  

>At5g38810.1 68418.m04693 F-box family protein predicted proteins,
           Arabidopsis thaliana
          Length = 259

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -2

Query: 245 IICNLFHLPYYPRCSWSSGAVSNPARSS*NCVVSLKTEPLLFSAINAQSYCNWAESF 75
           +IC L H PYY R    +G +   AR+S   VVS       F  ++ + + N+   F
Sbjct: 116 MICPLTHEPYYGRALSINGVLYYFARTSCFLVVSFNVRSEKFKFLDGKDFSNFHREF 172


>At4g07530.1 68417.m01179 hypothetical protein 
          Length = 818

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 349 FSFLPCPPQSIFQGCLLNSPSLLFSIINFI 260
           F FL   P  +F   LL+ PSLLFS I+ +
Sbjct: 54  FFFLLLSPSFLFYSLLLDLPSLLFSFISLV 83


>At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)
            family protein similar to SP|P41972 Isoleucyl-tRNA
            synthetase (EC 6.1.1.5) (Isoleucine--tRNA ligase) (IleRS)
            {Staphylococcus aureus}; contains Pfam profile PF00133:
            tRNA synthetases class I (I, L, M and V)
          Length = 1093

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = -2

Query: 515  AYFIAEGRVPE-SSSWLFVPSASISFGFRLLSWRSQQSPVSAVIRSDQ*FGGRL-AGLFL 342
            A F+ E + P  +  WL  P+  + F  RLL  R++ + V  + R+++  G  L A ++L
Sbjct: 919  AEFVFELKWPTLNEQWLSFPAEDVLFWQRLLELRTEVNKVLELARNEKMIGSSLEAKVYL 978

Query: 341  ST 336
             T
Sbjct: 979  HT 980


>At4g35930.1 68417.m05111 expressed protein 
          Length = 321

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 107 HLSPRITTAPSLEKQHNFNWNAPD 178
           H+S RI  A  L +Q++FN+  PD
Sbjct: 187 HVSQRIRMATILARQYHFNYTTPD 210


>At1g14710.2 68414.m01759 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 601

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -2

Query: 467 FVPSASISFGFRLLSW-RSQQSPVSAVIRSDQ--*FGGRLAG 351
           F P A +S+  + ++W R QQ P      SDQ   FG R +G
Sbjct: 86  FFPVADVSYNLQQIAWKRQQQMPPQRHYNSDQVGKFGARRSG 127


>At1g14710.1 68414.m01758 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 601

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -2

Query: 467 FVPSASISFGFRLLSW-RSQQSPVSAVIRSDQ--*FGGRLAG 351
           F P A +S+  + ++W R QQ P      SDQ   FG R +G
Sbjct: 86  FFPVADVSYNLQQIAWKRQQQMPPQRHYNSDQVGKFGARRSG 127


>At2g39210.1 68415.m04816 nodulin family protein similar to
           nodulin-like protein [Arabidopsis thaliana] GI:3329368,
           nodule-specific protein Nlj70 [Lotus japonicus]
           GI:3329366
          Length = 601

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -2

Query: 263 YPLLFNIICNLFHLPYYPRCSWSSGAVSNPARS 165
           +PLLF II  +F L YY    ++ G+V++P  S
Sbjct: 454 WPLLFAIISEIFGLKYYSTL-YNFGSVASPIGS 485


>At5g35690.1 68418.m04267 expressed protein
          Length = 603

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 19/75 (25%), Positives = 36/75 (48%)
 Frame = -3

Query: 415 RNRVQ*AQLSDLTNSLVAGWQVFSFLPCPPQSIFQGCLLNSPSLLFSIINFIRYYSILSV 236
           RN V   Q + +   L+    V + +  P +  F+     +P++  +I+NF     ILSV
Sbjct: 502 RNEVSPGQATTVLQMLLK--IVRNIIEQPNEMKFKRLRKGNPAIKRNILNFPAAVEILSV 559

Query: 235 IYFICRIIQDVHGVQ 191
           + F+  ++ +  G Q
Sbjct: 560 VGFVDEMVSESTGAQ 574


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,198,863
Number of Sequences: 28952
Number of extensions: 236331
Number of successful extensions: 710
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)