Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0968
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...    73   3e-14
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    30   0.28 
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   2.0  
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos...    26   4.5  

>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 73.3 bits (172), Expect = 3e-14
 Identities = 46/182 (25%), Positives = 85/182 (46%), Gaps = 2/182 (1%)
 Frame = +2

Query: 161 LKTKSESGVEFTSGITSNQES-GKVFGSLSXKFAVKDYGLTFTEKWNTDNTLATDITIQD 337
           ++T + +GV F   ++ NQ++ G + G L   F  K  GLT ++ W T N L + + + +
Sbjct: 30  VRTTAPNGVVFN--VSGNQDAKGVISGKLETSFNDKANGLTISQGWTTANVLESKVGLSE 87

Query: 338 KIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQGW 517
           + A GL + +  TF+P T  KT  L     +  +  + +++      + D    + ++G+
Sbjct: 88  QFAPGLHLNVNTTFSPATAAKTAILNLEHQHPLIHTHASVNALERKFLGDF--TVGHEGF 145

Query: 518 LAGVHTQFDTQKAKFSKNNFALXYQSGDFALHTNVDNGKD-FGGSIYXXVSDKLDCGVSM 694
           LAG    +D QK   S     + Y +   ++     N    F  S Y  VS  ++ G ++
Sbjct: 146 LAGAEFGYDVQKGNVSNYAATIGYLASPLSVALQASNNLSVFRASYYHRVSSDVEAGGNV 205

Query: 695 KW 700
            W
Sbjct: 206 TW 207


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 2/117 (1%)
 Frame = +2

Query: 146 FSNCDLKTKSESGVEFTSGITSNQESGKVFGSLSXKFAVKDYGLTFTEKWNTDNTLATDI 325
           F +  L  ++    +  SG +  +    V   +     + + G       ++DN     I
Sbjct: 168 FPSSQLSIEAGRNAQVESGFSLGESFAHVGNDMQFHLPISNSGAATPRSVHSDNQSQISI 227

Query: 326 TIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAV--NTNLDLDLAGPVVDV 490
            +     A     L G   PQ         T F+  ++     T+LD +L  PV D+
Sbjct: 228 EVGRDAPAAAATDLSGIIGPQMTKSPASSVTHFSTPSMLPIGGTSLDDELLAPVDDL 284


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +2

Query: 359  VTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDL 463
            V++E    P+  T +G+++T+F  DT+ +   L++
Sbjct: 3557 VSIEPLLKPEFFTGSGEVQTTFAKDTITITLPLNI 3591


>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
           Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 56  FIKHSTWLPHIMLTLE 103
           FIKH+ W+  ++LTL+
Sbjct: 288 FIKHAEWMSQVLLTLQ 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,643,692
Number of Sequences: 5004
Number of extensions: 51329
Number of successful extensions: 131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)