Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0968
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0) 186 2e-47
SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07) 31 0.68
SB_11395| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-06) 30 1.6
SB_59295| Best HMM Match : SET (HMM E-Value=0) 30 2.1
SB_31615| Best HMM Match : GCC2_GCC3 (HMM E-Value=0.053) 29 3.6
SB_49724| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_1362| Best HMM Match : PVL_ORF50 (HMM E-Value=4.5) 28 6.3
SB_57317| Best HMM Match : SSF (HMM E-Value=0) 28 8.4
SB_10616| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0)
Length = 379
Score = 186 bits (452), Expect = 2e-47
Identities = 80/181 (44%), Positives = 121/181 (66%)
Frame = +2
Query: 158 DLKTKSESGVEFTSGITSNQESGKVFGSLSXKFAVKDYGLTFTEKWNTDNTLATDITIQD 337
DLKT +++GVEF + +S ++GKVFGSL K+ DYG++ +EKW TDN L+++IT++D
Sbjct: 126 DLKTTTKNGVEFKTAGSSMNDTGKVFGSLETKYKYSDYGISLSEKWTTDNVLSSEITVED 185
Query: 338 KIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQGW 517
+IA GLK+ + TFAP TG K+ K+KT++ D + ++D D AGP V +AV+ Y+GW
Sbjct: 186 QIAKGLKLQFDTTFAPNTGKKSAKIKTAYKQDYLHATGDVDFDFAGPTVQGSAVVGYEGW 245
Query: 518 LAGVHTQFDTQKAKFSKNNFALXYQSGDFALHTNVDNGKDFGGSIYXXVSDKLDCGVSMK 697
AG +DT K+K NNF+L Y++ DF +H+ V++ F GSIY +S L+ +
Sbjct: 246 HAGYQVAYDTSKSKLIANNFSLGYRAKDFQIHSAVNDASKFTGSIYHQISKNLEVAAQLN 305
Query: 698 W 700
W
Sbjct: 306 W 306
Score = 34.7 bits (76), Expect = 0.073
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +1
Query: 79 PPYYADLGKKANDVFXXGYHFGVFKL 156
P Y DLGK+A DVF GY FG K+
Sbjct: 100 PVKYEDLGKEARDVFGKGYGFGCVKV 125
>SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)
Length = 1146
Score = 31.5 bits (68), Expect = 0.68
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +2
Query: 419 SFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQ--FDTQKAKFSKNNFALXYQ 592
++TN A++T +AGPVV V+A LN + +Q F T KA+ NF
Sbjct: 213 NYTNPICALHTVTKTSVAGPVVTVSAPLNDPVAKTVLVSQEFFITAKAEI---NFEWRAS 269
Query: 593 SGDFALHTNVDNGKDF 640
D A T ++ DF
Sbjct: 270 CADSAAQTAIEGNADF 285
>SB_11395| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-06)
Length = 672
Score = 30.3 bits (65), Expect = 1.6
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Frame = -2
Query: 474 PAKSRSKLVFTATVSLVNEVFNFPVLVPVCG-AKVPSRVTLRPAAILSWIVMSVANVLSV 298
P K VF AT+ L + V N V+ CG A+ P L ++ +V +++ LSV
Sbjct: 26 PVKGILLGVFAATI-LGSLVGNIAVIRATCGMARTPVTYILVMNMAVAELVYTLSMSLSV 84
Query: 297 FHFSVKVKP*SFTANLXERLPKTFPLSWLEVIP 199
+ ++ P F L + + +P+ + VIP
Sbjct: 85 IYLELEYWPYGFRCKLSDIGYRPYPILFPIVIP 117
>SB_59295| Best HMM Match : SET (HMM E-Value=0)
Length = 1230
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 296 NTD-NTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAV 445
+TD N L +D + +DK K E T + TGKL+T + DT+ +
Sbjct: 809 STDTNLLCSDASPEDKTTKEAKSVSETTPDTSSEESTGKLETKYNADTIDI 859
>SB_31615| Best HMM Match : GCC2_GCC3 (HMM E-Value=0.053)
Length = 870
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Frame = +2
Query: 38 IIPICEFIKHSTWLPHIMLTLERRPMMSSXXAITLVFSNCDLKTKSESGVEFTSG--ITS 211
++ + +K+ + ++ + P S +T++ + +++ ++ G+E G + S
Sbjct: 744 LVTVMIVVKYVVSFGRVFVSFYKNPRCSLGCCVTMLLTAGEVQEEA-FGLEDNKGFKMKS 802
Query: 212 NQESGKVFGSLSXKFAVKDYGLTFTE 289
+SG FG LS + AV D G+ E
Sbjct: 803 QIQSGPDFGGLSMEEAVGDLGILEVE 828
>SB_49724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 466
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +2
Query: 197 SGITSNQESGKVFGSLSXKFAVKDYGLTFTEKWNTDNTLATDITIQDK 340
SG+ +ESG+ SL+ A L T+ NTD T TD T Q+K
Sbjct: 65 SGLECKKESGEESDSLALSAATDGVLLVATDTQNTDGTW-TDGTDQEK 111
>SB_1362| Best HMM Match : PVL_ORF50 (HMM E-Value=4.5)
Length = 291
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 446 NTNLDLDLAGPVVDVAAVLNYQG--WLAGVHTQFDTQKAKFSKNNF 577
N L +DL V V VL + WL +T F+T+K K +KN+F
Sbjct: 95 NLQLYIDLGLKVTKVYRVLEFDQSPWLKQ-YTNFNTEKRKNAKNSF 139
>SB_57317| Best HMM Match : SSF (HMM E-Value=0)
Length = 389
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 235 KNLSAFLVGGDSAGEFNTRLALG 167
KNLS +++GG S G F T L+ G
Sbjct: 48 KNLSDYILGGRSLGSFVTALSAG 70
>SB_10616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 856
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 377 FAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQG 514
+AP K +L T F +DT AVN N ++ + +NY G
Sbjct: 172 YAPCNKPKLKRLLTRFVSDTGAVNQNFQTAMSEKFPVSSVKMNYLG 217
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 302 DNTLATDITI--QDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNT 451
++TLA +ITI + +A G + E TFAP+T TK + + T T
Sbjct: 1724 ESTLAPEITIASESTVAPGTTMAPETTFAPET-TKAPETTLALETTTAPETT 1774
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,815,258
Number of Sequences: 59808
Number of extensions: 381644
Number of successful extensions: 992
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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