Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0968
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58746-2|AAB00622.2|  283|Caenorhabditis elegans Hypothetical pr...   136   1e-32
Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical pr...    32   0.45 
AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical ...    32   0.45 
AL022270-2|CAB63433.2|  952|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z47356-4|CAA87417.1|  431|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U58746-2|AAB00622.2|  283|Caenorhabditis elegans Hypothetical
           protein R05G6.7 protein.
          Length = 283

 Score =  136 bits (330), Expect = 1e-32
 Identities = 63/172 (36%), Positives = 97/172 (56%)
 Frame = +2

Query: 185 VEFTSGITSNQESGKVFGSLSXKFAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVT 364
           VEF S  + N  SGK+ G+L  K+ +  YG+T TEKWNT+N L T I + ++   GLKVT
Sbjct: 40  VEFKSAASHNIGSGKLGGNLDVKYKIPQYGITLTEKWNTENQLGTVIEVNEQFGRGLKVT 99

Query: 365 LEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFD 544
           L+  +AP  G ++GK+K  +   T  V  ++ +  A PV++ A V +  GWL G    FD
Sbjct: 100 LDSLYAPHAGKRSGKVKLDWALPTARVTADVGVTSA-PVINAAGVFSRDGWLIGAAATFD 158

Query: 545 TQKAKFSKNNFALXYQSGDFALHTNVDNGKDFGGSIYXXVSDKLDCGVSMKW 700
           +   K +  + A  + +  + LH+ V N  DFG S+Y  V+  ++ G  + W
Sbjct: 159 SSSNKLAATSLAFGHSTPQYTLHSFVINSTDFGASLYHKVASNVEVGTQLGW 210



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 16/27 (59%), Positives = 20/27 (74%)
 Frame = +1

Query: 76  APPYYADLGKKANDVFXXGYHFGVFKL 156
           APP +ADLGK A D+F  GY+FG  K+
Sbjct: 2   APPTFADLGKSAKDLFNKGYNFGFLKI 28


>Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical protein
            T08A11.1 protein.
          Length = 1872

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +2

Query: 167  TKSESGVEFTSGITSNQESGKVFGSLSXKFAVKDYGLTFTEKWNTDNTLATD 322
            T+S  G         + +S    G+ S K+ V  +G T  EKWN D  + TD
Sbjct: 1044 TRSRRGANMEDDRKHSSKSNSA-GNASKKYKVWAWGSTGEEKWNVDMEIGTD 1094


>AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical
            protein T08A11.1 protein.
          Length = 1872

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +2

Query: 167  TKSESGVEFTSGITSNQESGKVFGSLSXKFAVKDYGLTFTEKWNTDNTLATD 322
            T+S  G         + +S    G+ S K+ V  +G T  EKWN D  + TD
Sbjct: 1044 TRSRRGANMEDDRKHSSKSNSA-GNASKKYKVWAWGSTGEEKWNVDMEIGTD 1094


>AL022270-2|CAB63433.2|  952|Caenorhabditis elegans Hypothetical
           protein C26G2.2 protein.
          Length = 952

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +2

Query: 269 YGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTND-TVAV 445
           Y  TFT  W+T++T+ T    QD   + +  T E T A  +      + T  T + T +V
Sbjct: 460 YPSTFTSSWSTESTVLT-TQQQDTTTSVILETTEATDAASSSLSPDDVSTQLTTEATTSV 518

Query: 446 NTNLDLD 466
            +++  D
Sbjct: 519 VSSVPPD 525


>Z47356-4|CAA87417.1|  431|Caenorhabditis elegans Hypothetical
           protein T15H9.4 protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 261 TANLXERLPKTFPLSWLEVIPLVNSTPDSLLVFRSQFENTKV 136
           T N  ER    FPLS    + ++ STP    +FR Q  N+ +
Sbjct: 352 TTNAIER-SVYFPLSTTAAVAILVSTPKKRSIFRQQDRNSAI 392


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,693,128
Number of Sequences: 27780
Number of extensions: 289413
Number of successful extensions: 768
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)