Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0968
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01280.1 68416.m00035 porin, putative similar to SP|P42055 34...    47   1e-05
At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34...    35   0.045
At2g32390.1 68415.m03958 glutamate receptor family protein (GLR3...    28   1.2  
At2g36340.1 68415.m04460 DNA-binding storekeeper protein-related...    29   2.2  
At5g51610.1 68418.m06398 ribosomal protein L11 family protein          28   6.8  
At4g30810.1 68417.m04365 serine carboxypeptidase S10 family prot...    27   9.0  

>At3g01280.1 68416.m00035 porin, putative similar to SP|P42055 34
           kDa outer mitochondrial membrane protein porin
           (Voltage-dependent anion-selective channel protein)
           (VDAC) {Solanum tuberosum}; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 276

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 1/177 (0%)
 Frame = +2

Query: 161 LKTKSESGVEFTSGITSNQESGKVFGSLSXKFAVKDYGLTFTEKWNTDNTLATDITIQDK 340
           + T S +GV  TS  T  ++   + G ++  F  +   +T   K  TD+T     T+ D+
Sbjct: 31  ITTFSPAGVAITS--TGTKKGDLLLGDVA--FQSRRKNITTDLKVCTDSTFLITATV-DE 85

Query: 341 IAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQGWL 520
            A GL+         Q    +GK++  + ++   ++T++ L    P V+ + V+      
Sbjct: 86  AAPGLRSIFSFKVPDQN---SGKVELQYLHEYAGISTSMGLT-QNPTVNFSGVIGSNVLA 141

Query: 521 AGVHTQFDTQKAKFSKNNFALXYQSGDFALHTNV-DNGKDFGGSIYXXVSDKLDCGV 688
            G    FDT+   F+K N  L +   D      V D G     S Y  V+   +  V
Sbjct: 142 VGTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGDLLNASYYHIVNPLFNTAV 198


>At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34
           kDa outer mitochondrial membrane protein porin
           (Voltage-dependent anion-selective channel protein)
           (VDAC) {Solanum tuberosum}; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 276

 Score = 35.1 bits (77), Expect = 0.045
 Identities = 36/150 (24%), Positives = 63/150 (42%)
 Frame = +2

Query: 161 LKTKSESGVEFTSGITSNQESGKVFGSLSXKFAVKDYGLTFTEKWNTDNTLATDITIQDK 340
           + T S SGV  TS  T+ ++ G     ++ ++  K+    F  K +TD+++ T +T+ + 
Sbjct: 31  ISTYSASGVALTS--TALKKGGVHAADVATQYKYKN--ALFDVKIDTDSSVLTTVTLTE- 85

Query: 341 IAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQGWL 520
           I    K  +     P   +   KL+  + +D   V     L    P++D+ A L      
Sbjct: 86  ILPSTKA-IASFKVPDYNS--AKLEVQYFHDHATVTAAAALK-QNPLIDITATLGSPVIS 141

Query: 521 AGVHTQFDTQKAKFSKNNFALXYQSGDFAL 610
            G    +DT    F+K N  +     D  L
Sbjct: 142 FGAEAGYDTTSKTFTKYNAGISVTKPDACL 171


>At2g32390.1 68415.m03958 glutamate receptor family protein (GLR3.5)
           plant glutamate receptor family, PMID:11379626
          Length = 895

 Score = 27.9 bits (59), Expect(2) = 1.2
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
 Frame = -2

Query: 309 VLSVFHFSVKVKP*SFTANLXERLPKTFPLSWLEVIPLVNST-PDSLLVFRSQFENTKVI 133
           +++VF FS      S   N    L +   L WL V+ ++NS+   SL    +  + T  I
Sbjct: 585 IITVFWFSFSTMFFSHRENTVSTLGRFVLLVWLFVVLIINSSYTASLTSILTVQQLTSRI 644

Query: 132 AXXEDIIGLLSKVSIIWGSXVLCFINSQIGIISQRI 25
              + +I     + +  G+    F+ +++ I   RI
Sbjct: 645 EGMDTLIASNEPIGVQDGTFAWKFLVNELNIAPSRI 680



 Score = 21.0 bits (42), Expect(2) = 1.2
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 402 VLVPVCGAKVPSRVTLRPAAILSWIV 325
           V+ PV GAK      L+P  I  W V
Sbjct: 529 VVAPVKGAKSSPWSFLKPFTIEMWAV 554


>At2g36340.1 68415.m04460 DNA-binding storekeeper protein-related
           contains similarity to storekeeper protein [Solanum
           tuberosum] gi|14268476|emb|CAC39398; contains PF04504:
           Protein of unknown function, DUF573
          Length = 414

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
 Frame = +2

Query: 296 NTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAG 475
           N+D+TL  +  ++ +     +  L  T    T T+T  L  S +   +  + N +L + G
Sbjct: 14  NSDDTLTRNREVEVEAMLSRRKQLRTTTTRTTTTRTTPLSLSSSASKMNWSKNDELVILG 73

Query: 476 PVVDV--AAVLNYQG-WLAGVHTQFDTQKAKFSK 568
            +VD      L+Y+  W A      D  +AKFSK
Sbjct: 74  GIVDYENETKLSYRSDWDALYRYIKDCVEAKFSK 107


>At5g51610.1 68418.m06398 ribosomal protein L11 family protein 
          Length = 182

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/67 (26%), Positives = 33/67 (49%)
 Frame = -2

Query: 267 SFTANLXERLPKTFPLSWLEVIPLVNSTPDSLLVFRSQFENTKVIAXXEDIIGLLSKVSI 88
           S +ANL  +   +F        PL++STP SL V       +K+    + ++G++ K+++
Sbjct: 23  SISANLTSKTNLSFQFLANRQSPLLSSTPRSLTVIAGATAPSKLRGKTKKVVGIV-KMNV 81

Query: 87  IWGSXVL 67
             G   L
Sbjct: 82  WAGKATL 88


>At4g30810.1 68417.m04365 serine carboxypeptidase S10 family protein
           similar to serine-type carboxypeptidase (SP:P55748)
           [Hordeum vulgare]
          Length = 479

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 280 SQAIVFHCKFXGKAAKNLSAFLVGGDSAGEFNTRLAL 170
           S+AIV H +   K + NL  ++VG     +F+ RL L
Sbjct: 196 SEAIVKHNQGSDKNSINLKGYMVGNGLMDDFHDRLGL 232


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,968,550
Number of Sequences: 28952
Number of extensions: 274169
Number of successful extensions: 761
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)