BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0966 (750 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 181 6e-46 SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 95 5e-20 SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 69 3e-12 SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068) 35 0.061 SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024) 30 1.7 SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24) 30 2.3 SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0 SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066) 28 7.0 SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0 SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3 SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3 SB_59169| Best HMM Match : Sre (HMM E-Value=3.3) 28 9.3 >SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) Length = 322 Score = 181 bits (440), Expect = 6e-46 Identities = 89/148 (60%), Positives = 106/148 (71%), Gaps = 6/148 (4%) Frame = +1 Query: 289 NMLEPSTKMPWFKGWQVER------KEGKADGKCLIEALDAILPPARPTDKPLRLPLQDV 450 NM+ +++MPWFK W +ER KE A G L E LD+ILPP+RP+ PLRLPLQDV Sbjct: 53 NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPSGLPLRLPLQDV 112 Query: 451 YKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDXXXXXXX 630 YKIGGIGTVPVGRVETGVLKPGT+V F+P+NITTEVKSVEMHHE+L EA+PGD Sbjct: 113 YKIGGIGTVPVGRVETGVLKPGTVVTFSPSNITTEVKSVEMHHESLAEALPGDNVGFNVK 172 Query: 631 XXXXXELRSWVMLAGDSKNNPP*GCCRF 714 +++ +AGD KNNPP C F Sbjct: 173 NVSVKDIKRG-NVAGDFKNNPPKPCKSF 199 >SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) Length = 547 Score = 95.1 bits (226), Expect = 5e-20 Identities = 41/79 (51%), Positives = 59/79 (74%) Frame = +1 Query: 10 SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPR 189 +QAD VL+++A GEFE G + GQTREHA+LA T GVK L++ VNKMD ++E R Sbjct: 244 TQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHLVILVNKMDDPTVKWNEER 303 Query: 190 FEEIKKEVSSYIKKIGYNP 246 +EEIK +++ ++KK+G+NP Sbjct: 304 YEEIKVKLTPFLKKVGFNP 322 >SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) Length = 123 Score = 69.3 bits (162), Expect = 3e-12 Identities = 32/50 (64%), Positives = 39/50 (78%) Frame = +1 Query: 10 SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 159 +QAD A+L+V A TGEFEAG GQTREHA+L +LGV QLIV +NK+D Sbjct: 35 AQADVAILVVDAITGEFEAGFESGGQTREHAILVRSLGVTQLIVAINKLD 84 >SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068) Length = 173 Score = 35.1 bits (77), Expect = 0.061 Identities = 19/69 (27%), Positives = 32/69 (46%) Frame = +1 Query: 403 PARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHE 582 P R T L + + I G GT+ G + +G + V +T +VKS++M + Sbjct: 104 PERTTSGSLLFAVDHCFSIRGQGTIMTGTILSGSVCVNDTVEIPSLKVTKKVKSMQMFKK 163 Query: 583 ALQEAVPGD 609 + +A GD Sbjct: 164 PVDKASQGD 172 >SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024) Length = 1213 Score = 30.3 bits (65), Expect = 1.7 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 9/72 (12%) Frame = -2 Query: 224 MYEDTS---FLISSNLGSLYGGSVESILFTPTMSCLTPRVKASKAC------SRV*PFLE 72 +Y+D S L+S N L ++E IL TPT + + K C + P Sbjct: 796 LYQDPSKLTALLSCNFNDLKIDNMEVILLTPTSMAASMATSSKKVCPSSAPTTTTNPTPS 855 Query: 71 IPASNSPVPAAT 36 + NSP+P+ T Sbjct: 856 VTNGNSPIPSGT 867 >SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24) Length = 1064 Score = 29.9 bits (64), Expect = 2.3 Identities = 15/57 (26%), Positives = 27/57 (47%) Frame = -1 Query: 618 TYIVSRYSFLESFVVHLHRFDFSSDVGGGKDNNGTWFQHTSFNSADGHGTNTTDFVY 448 T ++SRYS++E + H + + S + TW Q F++ H +N + Y Sbjct: 106 TSLISRYSYIEKLMTHHYTYRHISGGDPLHIPDLTWEQLKKFHATHYHPSNARFYTY 162 >SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 476 Score = 28.3 bits (60), Expect = 7.0 Identities = 8/25 (32%), Positives = 14/25 (56%) Frame = +1 Query: 277 WHGDNMLEPSTKMPWFKGWQVERKE 351 +H DN + PWF+ W +++E Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRE 215 >SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066) Length = 177 Score = 28.3 bits (60), Expect = 7.0 Identities = 10/40 (25%), Positives = 20/40 (50%) Frame = +1 Query: 418 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAP 537 ++P + D Y + G+GTV G G+++ ++ P Sbjct: 102 EEPSEFQIDDTYSVPGVGTVISGTCMKGIIRLNDTLLLGP 141 >SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3112 Score = 28.3 bits (60), Expect = 7.0 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%) Frame = +1 Query: 160 STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 300 ST S+ FE KK +S+ K +P+ + FVP WHG+ M+E Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113 >SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 919 Score = 27.9 bits (59), Expect = 9.3 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = -1 Query: 333 PSLEPRHFG*RLQHVVSVPSRNGHESDSSWVVANLLD 223 P+LEP + G L + S S GH+ D+ ++ LL+ Sbjct: 378 PNLEPSYIGKMLATIESTLSAKGHQEDAEEFLSCLLN 414 >SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 950 Score = 27.9 bits (59), Expect = 9.3 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Frame = +1 Query: 31 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVK-QLIVGVNKMDSTEPPYSEPRFEEIKK 207 ++VAA EF A ++KNG ++ F G + QL +G + M+ TE P P FE++K Sbjct: 371 VVVAACGAEFTAVVTKNG-----SVYTFGQGNQGQLGLGSSMME-TEFPERIPLFEKVKA 424 Query: 208 EVSS 219 S Sbjct: 425 RTVS 428 >SB_59169| Best HMM Match : Sre (HMM E-Value=3.3) Length = 447 Score = 27.9 bits (59), Expect = 9.3 Identities = 12/42 (28%), Positives = 22/42 (52%) Frame = -2 Query: 569 STDLTSVVMLAGAKTTMVPGFNTPVSTLPTGTVPIPPILYTS 444 +TD+TS+ M+ TT + ++T T + I I+ T+ Sbjct: 234 TTDITSITMIITTSTTDITSITMIITTTTTDDISITMIIITT 275 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 25,427,754 Number of Sequences: 59808 Number of extensions: 592861 Number of successful extensions: 1937 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 1720 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1933 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 2034222073 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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