Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0966
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                181   6e-46
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           95   5e-20
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              69   3e-12
SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068)             35   0.061
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)                   30   1.7  
SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24)       30   2.3  
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)             28   7.0  
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_59169| Best HMM Match : Sre (HMM E-Value=3.3)                       28   9.3  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  181 bits (440), Expect = 6e-46
 Identities = 89/148 (60%), Positives = 106/148 (71%), Gaps = 6/148 (4%)
 Frame = +1

Query: 289 NMLEPSTKMPWFKGWQVER------KEGKADGKCLIEALDAILPPARPTDKPLRLPLQDV 450
           NM+  +++MPWFK W +ER      KE  A G  L E LD+ILPP+RP+  PLRLPLQDV
Sbjct: 53  NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPSGLPLRLPLQDV 112

Query: 451 YKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDXXXXXXX 630
           YKIGGIGTVPVGRVETGVLKPGT+V F+P+NITTEVKSVEMHHE+L EA+PGD       
Sbjct: 113 YKIGGIGTVPVGRVETGVLKPGTVVTFSPSNITTEVKSVEMHHESLAEALPGDNVGFNVK 172

Query: 631 XXXXXELRSWVMLAGDSKNNPP*GCCRF 714
                +++    +AGD KNNPP  C  F
Sbjct: 173 NVSVKDIKRG-NVAGDFKNNPPKPCKSF 199


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 95.1 bits (226), Expect = 5e-20
 Identities = 41/79 (51%), Positives = 59/79 (74%)
 Frame = +1

Query: 10  SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPR 189
           +QAD  VL+++A  GEFE G  + GQTREHA+LA T GVK L++ VNKMD     ++E R
Sbjct: 244 TQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHLVILVNKMDDPTVKWNEER 303

Query: 190 FEEIKKEVSSYIKKIGYNP 246
           +EEIK +++ ++KK+G+NP
Sbjct: 304 YEEIKVKLTPFLKKVGFNP 322


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 32/50 (64%), Positives = 39/50 (78%)
 Frame = +1

Query: 10  SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 159
           +QAD A+L+V A TGEFEAG    GQTREHA+L  +LGV QLIV +NK+D
Sbjct: 35  AQADVAILVVDAITGEFEAGFESGGQTREHAILVRSLGVTQLIVAINKLD 84


>SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068)
          Length = 173

 Score = 35.1 bits (77), Expect = 0.061
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = +1

Query: 403 PARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHE 582
           P R T   L   +   + I G GT+  G + +G +     V      +T +VKS++M  +
Sbjct: 104 PERTTSGSLLFAVDHCFSIRGQGTIMTGTILSGSVCVNDTVEIPSLKVTKKVKSMQMFKK 163

Query: 583 ALQEAVPGD 609
            + +A  GD
Sbjct: 164 PVDKASQGD 172


>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
          Length = 1213

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
 Frame = -2

Query: 224  MYEDTS---FLISSNLGSLYGGSVESILFTPTMSCLTPRVKASKAC------SRV*PFLE 72
            +Y+D S    L+S N   L   ++E IL TPT    +    + K C      +   P   
Sbjct: 796  LYQDPSKLTALLSCNFNDLKIDNMEVILLTPTSMAASMATSSKKVCPSSAPTTTTNPTPS 855

Query: 71   IPASNSPVPAAT 36
            +   NSP+P+ T
Sbjct: 856  VTNGNSPIPSGT 867


>SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24)
          Length = 1064

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -1

Query: 618 TYIVSRYSFLESFVVHLHRFDFSSDVGGGKDNNGTWFQHTSFNSADGHGTNTTDFVY 448
           T ++SRYS++E  + H + +   S        + TW Q   F++   H +N   + Y
Sbjct: 106 TSLISRYSYIEKLMTHHYTYRHISGGDPLHIPDLTWEQLKKFHATHYHPSNARFYTY 162


>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 277 WHGDNMLEPSTKMPWFKGWQVERKE 351
           +H DN    +   PWF+ W  +++E
Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRE 215


>SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)
          Length = 177

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +1

Query: 418 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAP 537
           ++P    + D Y + G+GTV  G    G+++    ++  P
Sbjct: 102 EEPSEFQIDDTYSVPGVGTVISGTCMKGIIRLNDTLLLGP 141


>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +1

Query: 160  STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 300
            ST    S+  FE  KK      +S+ K    +P+  + FVP   WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113


>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 333 PSLEPRHFG*RLQHVVSVPSRNGHESDSSWVVANLLD 223
           P+LEP + G  L  + S  S  GH+ D+   ++ LL+
Sbjct: 378 PNLEPSYIGKMLATIESTLSAKGHQEDAEEFLSCLLN 414


>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 950

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = +1

Query: 31  LIVAAGTGEFEAGISKNGQTREHALLAFTLGVK-QLIVGVNKMDSTEPPYSEPRFEEIKK 207
           ++VAA   EF A ++KNG     ++  F  G + QL +G + M+ TE P   P FE++K 
Sbjct: 371 VVVAACGAEFTAVVTKNG-----SVYTFGQGNQGQLGLGSSMME-TEFPERIPLFEKVKA 424

Query: 208 EVSS 219
              S
Sbjct: 425 RTVS 428


>SB_59169| Best HMM Match : Sre (HMM E-Value=3.3)
          Length = 447

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -2

Query: 569 STDLTSVVMLAGAKTTMVPGFNTPVSTLPTGTVPIPPILYTS 444
           +TD+TS+ M+    TT +      ++T  T  + I  I+ T+
Sbjct: 234 TTDITSITMIITTSTTDITSITMIITTTTTDDISITMIIITT 275


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,427,754
Number of Sequences: 59808
Number of extensions: 592861
Number of successful extensions: 1937
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1933
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)