Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0966
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 356 8e-99
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 356 8e-99
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 278 2e-76
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 129 2e-30
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 129 2e-30
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 118 3e-27
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 87 2e-17
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 62 5e-10
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 62 5e-10
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 59 3e-09
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 59 3e-09
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 59 3e-09
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 39 0.003
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 38 0.008
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 37 0.013
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 33 0.16
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.16
AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical ... 29 2.7
AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical ... 29 2.7
AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical ... 29 2.7
AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein. 29 2.7
AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein. 29 2.7
Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical p... 29 4.7
AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical ... 29 4.7
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 356 bits (876), Expect = 8e-99
Identities = 169/229 (73%), Positives = 188/229 (82%)
Frame = +1
Query: 7 TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEP 186
TSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE
Sbjct: 106 TSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEA 165
Query: 187 RFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADG 366
RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A G
Sbjct: 166 RFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASG 225
Query: 367 KCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANI 546
K L+EALD+I+PP RPTD+PLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAP N+
Sbjct: 226 KTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNV 285
Query: 547 TTEVKSVEMHHEALQEAVPGDXXXXXXXXXXXXELRSWVMLAGDSKNNP 693
TTEVKSVEMHHE+L EAVPGD ++R + DSK +P
Sbjct: 286 TTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRG-SVCSDSKQDP 333
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 356 bits (876), Expect = 8e-99
Identities = 169/229 (73%), Positives = 188/229 (82%)
Frame = +1
Query: 7 TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEP 186
TSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE
Sbjct: 106 TSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEA 165
Query: 187 RFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADG 366
RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A G
Sbjct: 166 RFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASG 225
Query: 367 KCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANI 546
K L+EALD+I+PP RPTD+PLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAP N+
Sbjct: 226 KTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNV 285
Query: 547 TTEVKSVEMHHEALQEAVPGDXXXXXXXXXXXXELRSWVMLAGDSKNNP 693
TTEVKSVEMHHE+L EAVPGD ++R + DSK +P
Sbjct: 286 TTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRG-SVCSDSKQDP 333
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 278 bits (681), Expect(2) = 2e-76
Identities = 129/187 (68%), Positives = 148/187 (79%)
Frame = +1
Query: 133 LIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTK 312
L+V NKMDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSN 173
Query: 313 MPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRV 492
MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+PLRLPLQDVYKIGGIGTVPVGRV
Sbjct: 174 MPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRV 233
Query: 493 ETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDXXXXXXXXXXXXELRSWVMLA 672
ETG++KPG +V FAP N+TTEVKSVEMHHE+L EAVPGD ++R +
Sbjct: 234 ETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRG-SVC 292
Query: 673 GDSKNNP 693
DSK +P
Sbjct: 293 SDSKQDP 299
Score = 26.6 bits (56), Expect(2) = 2e-76
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +1
Query: 7 TSQADCAVLIVA 42
TSQADCAVL+VA
Sbjct: 106 TSQADCAVLVVA 117
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 129 bits (311), Expect = 2e-30
Identities = 72/184 (39%), Positives = 112/184 (60%), Gaps = 2/184 (1%)
Frame = +1
Query: 7 TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEP 186
TSQAD A+L+V A TGEFE G GQT+EHALL +LGV QLIV VNK+D+ + +S+
Sbjct: 269 TSQADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQD 326
Query: 187 RFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKAD 363
RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++ ++ W+ D
Sbjct: 327 RFDEIKNNLSVFLTRQAGFSKP--KFVPVSGFTGENLIK-RMELDWY------------D 371
Query: 364 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETG-VLKPGTIVVFAPA 540
G CL+E +D+ + P P+D PLR+ + DV K+ V G++E+G V K + + +
Sbjct: 372 GPCLLELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDDKVYIMSSV 431
Query: 541 NITT 552
T
Sbjct: 432 TAAT 435
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 129 bits (311), Expect = 2e-30
Identities = 72/184 (39%), Positives = 112/184 (60%), Gaps = 2/184 (1%)
Frame = +1
Query: 7 TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEP 186
TSQAD A+L+V A TGEFE G GQT+EHALL +LGV QLIV VNK+D+ + +S+
Sbjct: 287 TSQADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQD 344
Query: 187 RFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKAD 363
RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++ ++ W+ D
Sbjct: 345 RFDEIKNNLSVFLTRQAGFSKP--KFVPVSGFTGENLIK-RMELDWY------------D 389
Query: 364 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETG-VLKPGTIVVFAPA 540
G CL+E +D+ + P P+D PLR+ + DV K+ V G++E+G V K + + +
Sbjct: 390 GPCLLELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDDKVYIMSSV 449
Query: 541 NITT 552
T
Sbjct: 450 TAAT 453
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 118 bits (285), Expect = 3e-27
Identities = 69/202 (34%), Positives = 110/202 (54%), Gaps = 2/202 (0%)
Frame = +1
Query: 10 SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPR 189
+QAD AVL+++A GEFE G + GQTREH++L T GVK L++ VNKMD + E R
Sbjct: 209 NQADLAVLVISARRGEFETGFDRGGQTREHSMLVKTAGVKHLVILVNKMDDPTVKWEEER 268
Query: 190 FEEIKKEVSSYIKKIGYNPAA-VAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADG 366
F+EI+ +++ +++K+G+NP + +VP SG G + + T W G
Sbjct: 269 FKEIEGKLTPFLRKLGFNPKTDITYVPCSGLTGAFIKDRPTGSE--GNWY--------SG 318
Query: 367 KCLIEALDAILPP-ARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPAN 543
C IE +D +LP R + P+R + + Y +GTV +G++E+G ++ G +V P
Sbjct: 319 PCFIEFIDVLLPSYKRDFNGPVRCTVAEKY--SEMGTVIIGKMESGCVQKGDTLVVMPNK 376
Query: 544 ITTEVKSVEMHHEALQEAVPGD 609
+V + + V GD
Sbjct: 377 QPVQVLQIWADDVETERVVAGD 398
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 86.6 bits (205), Expect = 2e-17
Identities = 46/67 (68%), Positives = 51/67 (76%)
Frame = +1
Query: 7 TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEP 186
TSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQL V+ T P S
Sbjct: 106 TSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQL---VSLRSPTRSPDSSR 162
Query: 187 RFEEIKK 207
R + I++
Sbjct: 163 RSDTIQR 169
Score = 60.9 bits (141), Expect = 9e-10
Identities = 40/100 (40%), Positives = 48/100 (48%)
Frame = +2
Query: 197 KSRRKYPHTSRRLATTQLLSLSCPFLDGTETTCWSLQPKCLGSRDGRWSVRKAKLTENAS 376
+S + P +SRR T Q L D TETTC C GSRDG + RK L E S
Sbjct: 152 RSPTRSPDSSRRSDTIQRLFHLSQSPDSTETTCLRSPRTCHGSRDGLLNARKETLPERPS 211
Query: 377 LKLSMPSCHLPAPLTSPCVFPCKTYTKSVVLVPCPSAELK 496
+L PS H A LT VF + T+S L P S L+
Sbjct: 212 SRLLTPSSHHNAQLTDHSVFHSRMCTRSEELEPSQSDVLR 251
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 61.7 bits (143), Expect = 5e-10
Identities = 62/206 (30%), Positives = 92/206 (44%), Gaps = 5/206 (2%)
Frame = +1
Query: 7 TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEP 186
TSQ D AVL++AA G E QT+EH +LA +GVK + + +NK D E E
Sbjct: 129 TSQMDVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAIFINKADLVE----ED 177
Query: 187 RFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADG 366
+ ++ E + G+N GD P +G + EG+ D
Sbjct: 178 DLDLVEMEARELLSLHGFN-------------GD-------ATPVIRGSALSALEGQ-DI 216
Query: 367 KC---LIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFA- 534
C LI+ALD++ P R +P+ I G GTV VG +E GVLK G V
Sbjct: 217 SCIERLIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKGDKVEIKG 276
Query: 535 -PANITTEVKSVEMHHEALQEAVPGD 609
+ T +++ ++++E GD
Sbjct: 277 DGQTLQTTASDIQVFGKSVKEVRAGD 302
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 61.7 bits (143), Expect = 5e-10
Identities = 62/206 (30%), Positives = 92/206 (44%), Gaps = 5/206 (2%)
Frame = +1
Query: 7 TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEP 186
TSQ D AVL++AA G E QT+EH +LA +GVK + + +NK D E E
Sbjct: 129 TSQMDVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAIFINKADLVE----ED 177
Query: 187 RFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADG 366
+ ++ E + G+N GD P +G + EG+ D
Sbjct: 178 DLDLVEMEARELLSLHGFN-------------GD-------ATPVIRGSALSALEGQ-DI 216
Query: 367 KC---LIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFA- 534
C LI+ALD++ P R +P+ I G GTV VG +E GVLK G V
Sbjct: 217 SCIERLIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKGDKVEIKG 276
Query: 535 -PANITTEVKSVEMHHEALQEAVPGD 609
+ T +++ ++++E GD
Sbjct: 277 DGQTLQTTASDIQVFGKSVKEVRAGD 302
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 59.3 bits (137), Expect = 3e-09
Identities = 65/209 (31%), Positives = 100/209 (47%), Gaps = 9/209 (4%)
Frame = +1
Query: 10 SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK--QLIVGVNKMDSTEPPYSE 183
+Q + A+L+VAA G QTREH LLA +GV ++V +NK+D E P +E
Sbjct: 134 AQMEGAILVVAATDGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAE 184
Query: 184 PRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKAD 363
R E ++ ++ + + GY P P+ G + K P + G+
Sbjct: 185 TR-ELVEMDIREQLNEFGY-PGDTC--PVI--FGSALCALEGKQP---------EIGEEA 229
Query: 364 GKCLIEALDA--ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG-TIVVFA 534
K L+E LD ++P + ++P+ + VY I G GTV G++E G+LK G I +
Sbjct: 230 VKQLLEVLDNKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRGDKIEIVG 288
Query: 535 PANITTEVKSV----EMHHEALQEAVPGD 609
T VKSV E + + +A PGD
Sbjct: 289 GTKDGTTVKSVISGLESFRKTVDQAEPGD 317
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 59.3 bits (137), Expect = 3e-09
Identities = 65/209 (31%), Positives = 100/209 (47%), Gaps = 9/209 (4%)
Frame = +1
Query: 10 SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK--QLIVGVNKMDSTEPPYSE 183
+Q + A+L+VAA G QTREH LLA +GV ++V +NK+D E P +E
Sbjct: 135 AQMEGAILVVAATDGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAE 185
Query: 184 PRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKAD 363
R E ++ ++ + + GY P P+ G + K P + G+
Sbjct: 186 TR-ELVEMDIREQLNEFGY-PGDTC--PVI--FGSALCALEGKQP---------EIGEEA 230
Query: 364 GKCLIEALDA--ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG-TIVVFA 534
K L+E LD ++P + ++P+ + VY I G GTV G++E G+LK G I +
Sbjct: 231 VKQLLEVLDNKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRGDKIEIVG 289
Query: 535 PANITTEVKSV----EMHHEALQEAVPGD 609
T VKSV E + + +A PGD
Sbjct: 290 GTKDGTTVKSVISGLESFRKTVDQAEPGD 318
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 59.3 bits (137), Expect = 3e-09
Identities = 65/209 (31%), Positives = 100/209 (47%), Gaps = 9/209 (4%)
Frame = +1
Query: 10 SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK--QLIVGVNKMDSTEPPYSE 183
+Q + A+L+VAA G QTREH LLA +GV ++V +NK+D E P +E
Sbjct: 135 AQMEGAILVVAATDGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAE 185
Query: 184 PRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKAD 363
R E ++ ++ + + GY P P+ G + K P + G+
Sbjct: 186 TR-ELVEMDIREQLNEFGY-PGDTC--PVI--FGSALCALEGKQP---------EIGEEA 230
Query: 364 GKCLIEALDA--ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG-TIVVFA 534
K L+E LD ++P + ++P+ + VY I G GTV G++E G+LK G I +
Sbjct: 231 VKQLLEVLDNKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRGDKIEIVG 289
Query: 535 PANITTEVKSV----EMHHEALQEAVPGD 609
T VKSV E + + +A PGD
Sbjct: 290 GTKDGTTVKSVISGLESFRKTVDQAEPGD 318
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 39.1 bits (87), Expect = 0.003
Identities = 47/174 (27%), Positives = 74/174 (42%)
Frame = +1
Query: 85 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFV 264
QT EH LLA ++I+ +NK D E + + E K+V +K +G + +
Sbjct: 112 QTAEHLLLASKFCPNRVIIVLNKCDLAE----KSKISESAKKVRKGLKSMGVDENS---- 163
Query: 265 PISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQ 444
PI +E S +FK +E + K IE+ I P R + + +
Sbjct: 164 PI--------VEMSLADGYFK------EEMLQNLKLAIES--RIFEPKRDEEGEFLIAID 207
Query: 445 DVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPG 606
+ I G GTV G V GVL+ T + F N VK++E + + + G
Sbjct: 208 HCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKQRVGQVAAG 261
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 37.9 bits (84), Expect = 0.008
Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 3/157 (1%)
Frame = +1
Query: 82 GQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAF 261
G T+EH LA +L V +V V K+D P Y EE K ++ ++ P V
Sbjct: 268 GTTKEHLSLALSLHVPVYLV-VTKIDMC-PAYI---LEETMKNITRLVRSAKKLPILVRN 322
Query: 262 VPISGWHGDNMLEPSTKM-PWFKGWQVERKEGKADGKCLIEALDAILPPARPTDK--PLR 432
+ N PS K+ P F QV EG L+ ++P R ++ P
Sbjct: 323 MDDCVHAAVNF--PSKKVCPIF---QVSNVEGT--NLPLLRQFLNMVPLRRQLNENDPAH 375
Query: 433 LPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPAN 543
+ D+Y + G+GT+ G + +G ++ I++ P +
Sbjct: 376 FQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTS 412
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 37.1 bits (82), Expect = 0.013
Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 5/159 (3%)
Frame = +1
Query: 82 GQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAF 261
G T+EH LA +L V +V V K+D E + I + V S KK+
Sbjct: 267 GTTKEHLSLALSLHVPVYLV-VTKIDMCPANILEETMKNITRLVRS-AKKL--------- 315
Query: 262 VPISGWHGDNMLEPSTKMPWFKG---WQVERKEGKADGKCLIEALDAILPPARPTDK--P 426
PI + D+++ + P K +QV EG L+ I+P R ++ P
Sbjct: 316 -PILVRNMDDVVHAAVNFPSKKVCPIFQVSNVEGT--NLPLLRQFLNIVPLRRQLNENDP 372
Query: 427 LRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPAN 543
+ D+Y + G+GT+ G + +G ++ I++ P +
Sbjct: 373 AHFQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTS 411
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 33.5 bits (73), Expect = 0.16
Identities = 20/71 (28%), Positives = 31/71 (43%)
Frame = +1
Query: 394 ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEM 573
I P R + + + + I G GTV G V GVL+ T + F N VK++E
Sbjct: 150 IFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLET 209
Query: 574 HHEALQEAVPG 606
+ + + G
Sbjct: 210 WKQRVGQVAAG 220
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 33.5 bits (73), Expect = 0.16
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -2
Query: 152 LFTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 24
LF PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical
protein H30A04.1b protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 215 PHTSRRLATTQLLSLSCPFLD 277
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical
protein H30A04.1a protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 215 PHTSRRLATTQLLSLSCPFLD 277
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical
protein F49D11.10 protein.
Length = 766
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +1
Query: 508 KPGTIVVFAPANITTEVKSVEMHHEALQEAVPGD 609
KPGTI F P ITTE K H L+ + GD
Sbjct: 360 KPGTIQWFDPVTITTESKM----HVTLENTIDGD 389
>AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 215 PHTSRRLATTQLLSLSCPFLD 277
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 215 PHTSRRLATTQLLSLSCPFLD 277
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/103 (19%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Frame = -2
Query: 587 RASWCISTDLTSVVMLAGAKTTMVPGFNTPVSTLPTGTVPIPPILYTSCRGRRRGLSVGR 408
R + +S++ +S+ L + ++ TP TGT PIP +++ + + V +
Sbjct: 214 RKPYIVSSEASSLEDLVTSTGSLTHDHFTPEHQFKTGTAPIPTVVFDDVEEIGKVVKVHK 273
Query: 407 AG---GRMASRASMRHFPSALPSLRSTCHPLNQGILVEGSNML 288
G + + + H ++L S++ C + + G N++
Sbjct: 274 EGCPKNKKKNLGPIEH-SNSLISVKQPCKVHANQLPISGINLM 315
>AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/103 (19%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Frame = -2
Query: 587 RASWCISTDLTSVVMLAGAKTTMVPGFNTPVSTLPTGTVPIPPILYTSCRGRRRGLSVGR 408
R + +S++ +S+ L + ++ TP TGT PIP +++ + + V +
Sbjct: 214 RKPYIVSSEASSLEDLVTSTGSLTHDHFTPEHQFKTGTAPIPTVVFDDVEEIGKVVKVHK 273
Query: 407 AG---GRMASRASMRHFPSALPSLRSTCHPLNQGILVEGSNML 288
G + + + H ++L S++ C + + G N++
Sbjct: 274 EGCPKNKKKNLGPIEH-SNSLISVKQPCKVHANQLPISGINLM 315
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,422,925
Number of Sequences: 27780
Number of extensions: 416683
Number of successful extensions: 1289
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1279
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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