Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0966
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   417   e-119
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   407   e-116
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   396   e-112
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   282   2e-78
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    52   6e-09
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.3  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   9.3  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  417 bits (1027), Expect = e-119
 Identities = 202/236 (85%), Positives = 207/236 (87%)
 Frame = +1

Query: 7   TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEP 186
           TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 
Sbjct: 106 TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSET 165

Query: 187 RFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADG 366
           RFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLE S+KMPWFKGW VERKEGK +G
Sbjct: 166 RFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEG 225

Query: 367 KCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANI 546
           KCLIEALDAILPP RPTDK LRLPLQDVYKIGGIGTVPVGRVETGVLKPG +V FAPA +
Sbjct: 226 KCLIEALDAILPPTRPTDKALRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGL 285

Query: 547 TTEVKSVEMHHEALQEAVPGDXXXXXXXXXXXXELRSWVMLAGDSKNNPP*GCCRF 714
           TTEVKSVEMHHEALQEAVPGD            ELR    +AGDSKNNPP G   F
Sbjct: 286 TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG-YVAGDSKNNPPKGAADF 340



 Score = 33.5 bits (73), Expect = 0.002
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = +2

Query: 698 KGAADFTAQVIGLNHXG 748
           KGAADFTAQVI LNH G
Sbjct: 335 KGAADFTAQVIVLNHPG 351


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  407 bits (1001), Expect = e-116
 Identities = 197/227 (86%), Positives = 202/227 (88%)
 Frame = +1

Query: 7   TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEP 186
           TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 
Sbjct: 49  TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSET 108

Query: 187 RFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADG 366
           RFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLE S+KMPWFKGW VERKEGK +G
Sbjct: 109 RFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEG 168

Query: 367 KCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANI 546
           KCLIEALDAILPP RPTDK LRLPLQDVYKIGGIGTVPVGRVETGVLKPG +V FAPA +
Sbjct: 169 KCLIEALDAILPPTRPTDKALRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGL 228

Query: 547 TTEVKSVEMHHEALQEAVPGDXXXXXXXXXXXXELRSWVMLAGDSKN 687
           TTEVKSVEMHHEALQEAVPGD            ELR    +AGDSKN
Sbjct: 229 TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG-YVAGDSKN 274


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  396 bits (974), Expect = e-112
 Identities = 191/236 (80%), Positives = 202/236 (85%)
 Frame = +1

Query: 7   TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEP 186
           TSQADCAVLIVAAG GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD T+PPYSE 
Sbjct: 106 TSQADCAVLIVAAGIGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDMTDPPYSEA 165

Query: 187 RFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADG 366
           RFEEIKKEVSSYIKKIGYN A+VAFVPISGWHGDNMLEPS K PW+KGW+VERK+G ADG
Sbjct: 166 RFEEIKKEVSSYIKKIGYNTASVAFVPISGWHGDNMLEPSPKTPWYKGWKVERKDGNADG 225

Query: 367 KCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANI 546
           K LIEALDAILPP+RPTDK LRLPLQDVYKIGGIGTVPVGRVETG+LKPG +V FAPA +
Sbjct: 226 KTLIEALDAILPPSRPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGMLVTFAPAAL 285

Query: 547 TTEVKSVEMHHEALQEAVPGDXXXXXXXXXXXXELRSWVMLAGDSKNNPP*GCCRF 714
           TTEVKSVEMHHEAL EA+PGD            ELR    +AGDSKN PP G   F
Sbjct: 286 TTEVKSVEMHHEALTEALPGDNVGFNVKNISVKELRRG-YVAGDSKNQPPRGAADF 340



 Score = 32.3 bits (70), Expect = 0.005
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +2

Query: 698 KGAADFTAQVIGLNHXG 748
           +GAADFTAQVI LNH G
Sbjct: 335 RGAADFTAQVIVLNHPG 351


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  282 bits (692), Expect = 2e-78
 Identities = 132/139 (94%), Positives = 134/139 (96%)
 Frame = +1

Query: 7   TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEP 186
           TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 
Sbjct: 33  TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSET 92

Query: 187 RFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADG 366
           RFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLE S+KMPWFKGW VERKEGK +G
Sbjct: 93  RFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEG 152

Query: 367 KCLIEALDAILPPARPTDK 423
           KCLIEALDAILPP RPTDK
Sbjct: 153 KCLIEALDAILPPTRPTDK 171


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 52.0 bits (119), Expect = 6e-09
 Identities = 28/52 (53%), Positives = 30/52 (57%)
 Frame = +1

Query: 559 KSVEMHHEALQEAVPGDXXXXXXXXXXXXELRSWVMLAGDSKNNPP*GCCRF 714
           KSVEMHHEAL EA+PGD            ELR    +AGDSKN PP G   F
Sbjct: 1   KSVEMHHEALTEALPGDNVGFNVKNISVKELRRG-YVAGDSKNQPPRGAADF 51



 Score = 32.3 bits (70), Expect = 0.005
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +2

Query: 698 KGAADFTAQVIGLNHXG 748
           +GAADFTAQVI LNH G
Sbjct: 46  RGAADFTAQVIVLNHPG 62


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 312 FG*RLQHVVSVPSRNGHESDSSWV 241
           FG  L H++ V  +N   + + WV
Sbjct: 35  FGLSLHHIIDVDEKNQILTTNCWV 58


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 155 WIPLNHHTVSPDLRKSRRKY 214
           W+P+N +  S +L   +R+Y
Sbjct: 443 WLPVNENYKSLNLAAQKREY 462


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,290
Number of Sequences: 438
Number of extensions: 4834
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)