Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0965
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0145 - 13116302-13116958,13117365-13117430,13117786-131180...    30   1.7  
04_04_1072 - 30587344-30588034,30589866-30590035,30590682-30590879     28   6.9  
12_02_1238 - 27246769-27246948,27247030-27247104,27247848-272479...    28   9.1  
06_01_0602 - 4342333-4342790,4342899-4345623                           28   9.1  

>01_03_0145 -
           13116302-13116958,13117365-13117430,13117786-13118065,
           13118283-13119028
          Length = 582

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/68 (29%), Positives = 36/68 (52%)
 Frame = -1

Query: 441 RTGTLPYERLIGKLDNCSNVIFYTLMRFFRLIKHSKSLVNTSHS*WLSGKISEDIEKLPT 262
           R G LP    + +   CS+ +F+T  +FFR    +K   + +H  W +   S+   ++P 
Sbjct: 224 RDGILPTP--VDRNTTCSSKLFHT--KFFRRSCWAKRKNDKAH--WRAKSRSDPSREIPA 277

Query: 261 KKKQLILF 238
           K ++LI+F
Sbjct: 278 KGRELIIF 285


>04_04_1072 - 30587344-30588034,30589866-30590035,30590682-30590879
          Length = 352

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 254 NNLSCLPNITCLNVHHNLIRSPD*TIENNRQTKE 153
           N++ CL  +  LNV  NL+ S   TIE  R  +E
Sbjct: 94  NSIGCLSKLKVLNVSGNLLESLPNTIEECRALEE 127


>12_02_1238 -
           27246769-27246948,27247030-27247104,27247848-27247959,
           27248213-27248295,27248544-27248791,27249448-27249533,
           27250131-27250210,27250310-27250480,27250998-27251099,
           27251591-27251743,27252459-27252575,27252715-27252804,
           27253057-27253196,27253339-27253396,27253931-27254010,
           27254215-27254349,27254482-27254646,27254982-27255021
          Length = 704

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -1

Query: 369 LMRFFRLIKHSKSLVNTSHS*WLSGKISEDIEKLPTKKKQLILFT*YY 226
           L++FF L+  S+  V  S   WL   +S+ +  + +++  L+L    Y
Sbjct: 572 LLKFFILLMQSRGAVLVSLLPWLQSLLSQHMSSIVSQESSLLLLNSLY 619


>06_01_0602 - 4342333-4342790,4342899-4345623
          Length = 1060

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = -2

Query: 251 NLSCLPNITCLNVHHNLI 198
           NLS L N+T LN+ HNLI
Sbjct: 364 NLSNLTNLTALNLSHNLI 381


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,873,722
Number of Sequences: 37544
Number of extensions: 329002
Number of successful extensions: 643
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)