Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0965
         (750 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF172329-1|AAF02618.1| 3579|Drosophila melanogaster starry night...    32   0.96 
AE013599-1158|AAF58763.4| 3574|Drosophila melanogaster CG11895-P...    32   0.96 
AB028498-1|BAA84069.1| 3575|Drosophila melanogaster Flamingo pro...    32   0.96 

>AF172329-1|AAF02618.1| 3579|Drosophila melanogaster starry night
            protein protein.
          Length = 3579

 Score = 31.9 bits (69), Expect = 0.96
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = -2

Query: 239  LPNITCLNVHHNLIRSPD*TIENNRQTKEDEIETI----SRYPEKFATYK 102
            L + + L  HHN I  P   +EN R  +E   +++      YP+K+ +YK
Sbjct: 3309 LTDTSYLQQHHNKINMPPSILENIRDAREGYEDSLYGRRGEYPDKYGSYK 3358


>AE013599-1158|AAF58763.4| 3574|Drosophila melanogaster CG11895-PA
            protein.
          Length = 3574

 Score = 31.9 bits (69), Expect = 0.96
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = -2

Query: 239  LPNITCLNVHHNLIRSPD*TIENNRQTKEDEIETI----SRYPEKFATYK 102
            L + + L  HHN I  P   +EN R  +E   +++      YP+K+ +YK
Sbjct: 3309 LTDTSYLQQHHNKINMPPSILENIRDAREGYEDSLYGRRGEYPDKYGSYK 3358


>AB028498-1|BAA84069.1| 3575|Drosophila melanogaster Flamingo protein.
          Length = 3575

 Score = 31.9 bits (69), Expect = 0.96
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = -2

Query: 239  LPNITCLNVHHNLIRSPD*TIENNRQTKEDEIETI----SRYPEKFATYK 102
            L + + L  HHN I  P   +EN R  +E   +++      YP+K+ +YK
Sbjct: 3310 LTDTSYLQQHHNKINMPPSILENIRDAREGYEDSLYGRRGEYPDKYGSYK 3359


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,133,169
Number of Sequences: 53049
Number of extensions: 578956
Number of successful extensions: 1218
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3417159966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)