Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0965
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26830.1 68418.m03201 threonyl-tRNA synthetase / threonine--t...    29   4.4  
At4g31100.1 68417.m04414 wall-associated kinase, putative              28   5.8  
At2g48110.1 68415.m06022 expressed protein                             28   7.6  
At2g26680.1 68415.m03200 expressed protein similar to NLPE1 (GI:...    28   7.6  

>At5g26830.1 68418.m03201 threonyl-tRNA synthetase / threonine--tRNA
           ligase (THRRS) identical to SP|O04630 Threonyl-tRNA
           synthetase, mitochondrial precursor (EC 6.1.1.3)
           (Threonine--tRNA ligase) (ThrRS) {Arabidopsis thaliana}
          Length = 709

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +3

Query: 588 RFRITKDQAIIFYTNNNCKGVKIVN*FKSNMQI 686
           R  +TKDQA+  ++ NN K V+++N   ++M I
Sbjct: 212 RIEVTKDQALEMFSENNFK-VELINGLPADMTI 243


>At4g31100.1 68417.m04414 wall-associated kinase, putative
          Length = 786

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
 Frame = +2

Query: 332 DLECLINRKNLISV*KITFEQLSSF--PINLSYGSVPVRSAILSGG-RHNGKKALSGRGL 502
           ++ECL     L+    +  +++ S   P   S+GSV VRS I S G   +GK +     L
Sbjct: 64  EIECLNTSGKLVPFLSVISKEVVSIHLPGRQSFGSVRVRSPITSAGCSSDGKDSAPVMNL 123

Query: 503 S-SPLILED 526
           + SP  + D
Sbjct: 124 TDSPFFVSD 132


>At2g48110.1 68415.m06022 expressed protein
          Length = 1295

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -3

Query: 430 AAIRKVNRETRQLLECNFLHTYEILS 353
           AA+R V RE   L  C F+H  EILS
Sbjct: 324 AALRLVQRENLCLRYCFFMHMLEILS 349


>At2g26680.1 68415.m03200 expressed protein similar to NLPE1
           (GI:13022100) [Rhizobium etli];
          Length = 319

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -1

Query: 447 ADRTGTLPYERLIGKLDN 394
           +DRTG + + +L+G+LDN
Sbjct: 190 SDRTGDITFHKLVGRLDN 207


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,574,298
Number of Sequences: 28952
Number of extensions: 294557
Number of successful extensions: 679
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)