Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0964
         (769 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.8  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   9.5  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   9.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.5  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -3

Query: 221 FRATHTLRMLPYLENIFSISYLDALVPKLPTYTLQERSHS 102
           FR+  T +M P+++ +F       LV + P Y  +   +S
Sbjct: 333 FRSPQTHKMAPWVKRVFIHILPRLLVMRRPQYKFETNRYS 372


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -3

Query: 221 FRATHTLRMLPYLENIFSISYLDALVPKLPTYTLQERSHS 102
           FR+  T +M P+++ +F       LV + P Y  +   +S
Sbjct: 333 FRSPQTHKMAPWVKRVFIHILPRLLVMRRPQYKFETNRYS 372


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 64  PPFSIKTKMSRYREWDLSCKVY 129
           P   I + M R   W++ C VY
Sbjct: 111 PMLVISSFMERMIGWEIGCDVY 132


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 119 AKCTWATWVLMRLNMK 166
           +KCTW      R+N+K
Sbjct: 68  SKCTWTITSYHRINLK 83


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 64  PPFSIKTKMSRYREWDLSCKVY 129
           P   I + M R   W++ C VY
Sbjct: 111 PMLVISSFMERMIGWEIGCDVY 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,453
Number of Sequences: 438
Number of extensions: 3218
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)