Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0962
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0141 + 1631649-1631727,1633607-1633651,1633841-1634454,163...    29   3.5  
03_02_0061 + 5342338-5342401,5343025-5343131,5343962-5344009,534...    29   3.5  
08_02_1019 - 23657175-23658047                                         29   4.7  
06_01_0719 + 5239238-5239635,5239735-5239945,5240379-5240454,524...    28   6.2  

>04_01_0141 +
           1631649-1631727,1633607-1633651,1633841-1634454,
           1634569-1634627,1634721-1634911,1636739-1637073
          Length = 440

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 393 CGQVVIAKSRWSEGGACLTSATLKAM 470
           C +V + K+ WS GG C T+  LKAM
Sbjct: 142 CARVAMYKACWS-GGGCSTAGQLKAM 166


>03_02_0061 +
           5342338-5342401,5343025-5343131,5343962-5344009,
           5344297-5344399,5345152-5345234,5345271-5346089,
           5346189-5346338,5346420-5346797
          Length = 583

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 225 SAPSLRAILRRVFLLFSNFVDMSVLKDIFWCYLTTL 118
           S P  R ++ ++ +LFS  +D +V     WC++ +L
Sbjct: 109 SLPQTRRVMAKLLVLFSLPIDQAVTLTDIWCHIHSL 144


>08_02_1019 - 23657175-23658047
          Length = 290

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -1

Query: 184 AVFQFCRYVCVERHLL-VLFNNFKY 113
           AV QFC  VCV+RH+L V  +N K+
Sbjct: 259 AVQQFCEEVCVKRHVLKVWMHNNKH 283


>06_01_0719 +
           5239238-5239635,5239735-5239945,5240379-5240454,
           5240573-5240675,5241089-5241157,5241318-5241354,
           5241445-5241519,5241598-5241649,5241752-5241796,
           5241994-5242080,5242348-5242445
          Length = 416

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -2

Query: 438 RLPRSTCSWLSPPDHSNSVFRSLSMENMLXGSSSPSCGKFIRRLGTKTVSSMVL 277
           +  R+ C WLS   +  ++ R +SME    G SS +C   I  L ++  +  VL
Sbjct: 29  KFARAFCYWLSRVSNPKNLRRLMSME----GPSSGACQSHINHLSSRMQNLAVL 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,617,541
Number of Sequences: 37544
Number of extensions: 369147
Number of successful extensions: 989
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)