Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0962
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52640| Best HMM Match : Spot_14 (HMM E-Value=0.25)                  36   0.024
SB_38234| Best HMM Match : RuvB_C (HMM E-Value=7)                      30   2.1  
SB_13922| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_41275| Best HMM Match : Lig_chan (HMM E-Value=2.3e-11)              29   3.6  
SB_42974| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_37892| Best HMM Match : rve (HMM E-Value=2.1e-16)                   28   8.4  

>SB_52640| Best HMM Match : Spot_14 (HMM E-Value=0.25)
          Length = 245

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 15/34 (44%), Positives = 25/34 (73%)
 Frame = +2

Query: 227 FSKQSILNDMEKFVKMVNTMDETVLVPSRLMNLP 328
           + K+S++  +E F+K V+ M  TVL+P RLM++P
Sbjct: 9   YYKRSVVAVVENFLKTVDDMKATVLIPCRLMDIP 42


>SB_38234| Best HMM Match : RuvB_C (HMM E-Value=7)
          Length = 184

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
 Frame = +2

Query: 218 GAEFSKQSILNDMEKFVKMVNTMD------ETVLVPSRLMNLPQEGD 340
           G +F  +S    ++KF+K+++T+D         +VP+ LMN P  G+
Sbjct: 51  GTQFKYESNSAGLDKFIKLIDTVDLEGGPVGKPVVPAALMNRPTRGE 97


>SB_13922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = -3

Query: 347 GHRHLPVANSSDDLVLRPSHPWC*PF*QISPCH--SGCSVLKIQHHHYGRFCAGCSCCFP 174
           G   +PV NSS  L  R SH        ISP    SG S+L  +HH     C   +C   
Sbjct: 677 GEAAIPVRNSSKSLCSRGSHSSTDSDSHISPSFTTSGQSLLSGKHHK----CGNKNCTSD 732

Query: 173 ILS 165
           ILS
Sbjct: 733 ILS 735


>SB_41275| Best HMM Match : Lig_chan (HMM E-Value=2.3e-11)
          Length = 1171

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 332 EGDDDPFSMFSMLNDLKTELLWSGGDSQEQVERGRRV 442
           EGD D FS F+ L      +L  GGD+  ++  GR V
Sbjct: 151 EGDGDEFSFFNSLWFCLASMLQQGGDATPKMLSGRIV 187


>SB_42974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = -3

Query: 254 CHSGCSVLKIQHHHYGRFCAGCSCCFPI 171
           CH  C        H   F   CSCC PI
Sbjct: 380 CHGECLSSVKPFAHKSGFATSCSCCAPI 407


>SB_37892| Best HMM Match : rve (HMM E-Value=2.1e-16)
          Length = 824

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 22/65 (33%), Positives = 34/65 (52%)
 Frame = +2

Query: 227 FSKQSILNDMEKFVKMVNTMDETVLVPSRLMNLPQEGDDDPFSMFSMLNDLKTELLWSGG 406
           F     +ND+++F+ MVN M +   +PS L NL     ++P         LK E  W+ G
Sbjct: 328 FPTPQTVNDLQRFMGMVNLMGK--FLPS-LANL-----NEPLRQL-----LKKENQWAWG 374

Query: 407 DSQEQ 421
           +SQ+Q
Sbjct: 375 ESQQQ 379


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,137,134
Number of Sequences: 59808
Number of extensions: 421832
Number of successful extensions: 1093
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)