BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0962 (700 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_52640| Best HMM Match : Spot_14 (HMM E-Value=0.25) 36 0.024 SB_38234| Best HMM Match : RuvB_C (HMM E-Value=7) 30 2.1 SB_13922| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6 SB_41275| Best HMM Match : Lig_chan (HMM E-Value=2.3e-11) 29 3.6 SB_42974| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4 SB_37892| Best HMM Match : rve (HMM E-Value=2.1e-16) 28 8.4 >SB_52640| Best HMM Match : Spot_14 (HMM E-Value=0.25) Length = 245 Score = 36.3 bits (80), Expect = 0.024 Identities = 15/34 (44%), Positives = 25/34 (73%) Frame = +2 Query: 227 FSKQSILNDMEKFVKMVNTMDETVLVPSRLMNLP 328 + K+S++ +E F+K V+ M TVL+P RLM++P Sbjct: 9 YYKRSVVAVVENFLKTVDDMKATVLIPCRLMDIP 42 >SB_38234| Best HMM Match : RuvB_C (HMM E-Value=7) Length = 184 Score = 29.9 bits (64), Expect = 2.1 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 6/47 (12%) Frame = +2 Query: 218 GAEFSKQSILNDMEKFVKMVNTMD------ETVLVPSRLMNLPQEGD 340 G +F +S ++KF+K+++T+D +VP+ LMN P G+ Sbjct: 51 GTQFKYESNSAGLDKFIKLIDTVDLEGGPVGKPVVPAALMNRPTRGE 97 >SB_13922| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1012 Score = 29.1 bits (62), Expect = 3.6 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Frame = -3 Query: 347 GHRHLPVANSSDDLVLRPSHPWC*PF*QISPCH--SGCSVLKIQHHHYGRFCAGCSCCFP 174 G +PV NSS L R SH ISP SG S+L +HH C +C Sbjct: 677 GEAAIPVRNSSKSLCSRGSHSSTDSDSHISPSFTTSGQSLLSGKHHK----CGNKNCTSD 732 Query: 173 ILS 165 ILS Sbjct: 733 ILS 735 >SB_41275| Best HMM Match : Lig_chan (HMM E-Value=2.3e-11) Length = 1171 Score = 29.1 bits (62), Expect = 3.6 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = +2 Query: 332 EGDDDPFSMFSMLNDLKTELLWSGGDSQEQVERGRRV 442 EGD D FS F+ L +L GGD+ ++ GR V Sbjct: 151 EGDGDEFSFFNSLWFCLASMLQQGGDATPKMLSGRIV 187 >SB_42974| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 477 Score = 27.9 bits (59), Expect = 8.4 Identities = 11/28 (39%), Positives = 11/28 (39%) Frame = -3 Query: 254 CHSGCSVLKIQHHHYGRFCAGCSCCFPI 171 CH C H F CSCC PI Sbjct: 380 CHGECLSSVKPFAHKSGFATSCSCCAPI 407 >SB_37892| Best HMM Match : rve (HMM E-Value=2.1e-16) Length = 824 Score = 27.9 bits (59), Expect = 8.4 Identities = 22/65 (33%), Positives = 34/65 (52%) Frame = +2 Query: 227 FSKQSILNDMEKFVKMVNTMDETVLVPSRLMNLPQEGDDDPFSMFSMLNDLKTELLWSGG 406 F +ND+++F+ MVN M + +PS L NL ++P LK E W+ G Sbjct: 328 FPTPQTVNDLQRFMGMVNLMGK--FLPS-LANL-----NEPLRQL-----LKKENQWAWG 374 Query: 407 DSQEQ 421 +SQ+Q Sbjct: 375 ESQQQ 379 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 21,137,134 Number of Sequences: 59808 Number of extensions: 421832 Number of successful extensions: 1093 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 988 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1090 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1829596184 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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