Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0962
         (700 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR457220-1|CAG33501.1|  183|Homo sapiens STRAIT11499 protein.          42   0.003
BC019332-1|AAH19332.1|  183|Homo sapiens MID1IP1 protein protein.      42   0.003
BC008908-1|AAH08908.1|  183|Homo sapiens MID1 interacting protei...    42   0.003
AK001248-1|BAA91580.1|  183|Homo sapiens protein ( Homo sapiens ...    42   0.003
AJ272057-1|CAB89113.1|  183|Homo sapiens hypothetical protein pr...    42   0.003
BC040275-1|AAH40275.1| 1181|Homo sapiens RASGRF1 protein protein.      30   6.9  

>CR457220-1|CAG33501.1|  183|Homo sapiens STRAIT11499 protein.
          Length = 183

 Score = 41.5 bits (93), Expect = 0.003
 Identities = 25/63 (39%), Positives = 37/63 (58%)
 Frame = +2

Query: 233 KQSILNDMEKFVKMVNTMDETVLVPSRLMNLPQEGDDDPFSMFSMLNDLKTELLWSGGDS 412
           K S+ N M +F+  VN MD+TV+VPS L ++P     DP     + ND+  E+  SGG  
Sbjct: 11  KHSLFNAMNRFIGAVNNMDQTVMVPSLLRDVPLA---DP----GLDNDVGVEVGGSGGCL 63

Query: 413 QEQ 421
           +E+
Sbjct: 64  EER 66


>BC019332-1|AAH19332.1|  183|Homo sapiens MID1IP1 protein protein.
          Length = 183

 Score = 41.5 bits (93), Expect = 0.003
 Identities = 25/63 (39%), Positives = 37/63 (58%)
 Frame = +2

Query: 233 KQSILNDMEKFVKMVNTMDETVLVPSRLMNLPQEGDDDPFSMFSMLNDLKTELLWSGGDS 412
           K S+ N M +F+  VN MD+TV+VPS L ++P     DP     + ND+  E+  SGG  
Sbjct: 11  KHSLFNAMNRFIGAVNNMDQTVMVPSLLRDVPLA---DP----GLDNDVGVEVGGSGGCL 63

Query: 413 QEQ 421
           +E+
Sbjct: 64  EER 66


>BC008908-1|AAH08908.1|  183|Homo sapiens MID1 interacting protein 1
           (gastrulation specific G12 homolog (zebrafish)) protein.
          Length = 183

 Score = 41.5 bits (93), Expect = 0.003
 Identities = 25/63 (39%), Positives = 37/63 (58%)
 Frame = +2

Query: 233 KQSILNDMEKFVKMVNTMDETVLVPSRLMNLPQEGDDDPFSMFSMLNDLKTELLWSGGDS 412
           K S+ N M +F+  VN MD+TV+VPS L ++P     DP     + ND+  E+  SGG  
Sbjct: 11  KHSLFNAMNRFIGAVNNMDQTVMVPSLLRDVPLA---DP----GLDNDVGVEVGGSGGCL 63

Query: 413 QEQ 421
           +E+
Sbjct: 64  EER 66


>AK001248-1|BAA91580.1|  183|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10386 fis, clone NT2RM2002142, weakly similar to
           GASTRULATION SPECIFIC PROTEIN G12. ).
          Length = 183

 Score = 41.5 bits (93), Expect = 0.003
 Identities = 25/63 (39%), Positives = 37/63 (58%)
 Frame = +2

Query: 233 KQSILNDMEKFVKMVNTMDETVLVPSRLMNLPQEGDDDPFSMFSMLNDLKTELLWSGGDS 412
           K S+ N M +F+  VN MD+TV+VPS L ++P     DP     + ND+  E+  SGG  
Sbjct: 11  KHSLFNAMNRFIGAVNNMDQTVMVPSLLRDVPLA---DP----GLDNDVGVEVGGSGGCL 63

Query: 413 QEQ 421
           +E+
Sbjct: 64  EER 66


>AJ272057-1|CAB89113.1|  183|Homo sapiens hypothetical protein
           protein.
          Length = 183

 Score = 41.5 bits (93), Expect = 0.003
 Identities = 25/63 (39%), Positives = 37/63 (58%)
 Frame = +2

Query: 233 KQSILNDMEKFVKMVNTMDETVLVPSRLMNLPQEGDDDPFSMFSMLNDLKTELLWSGGDS 412
           K S+ N M +F+  VN MD+TV+VPS L ++P     DP     + ND+  E+  SGG  
Sbjct: 11  KHSLFNAMNRFIGAVNNMDQTVMVPSLLRDVPLA---DP----GLDNDVGVEVGGSGGCL 63

Query: 413 QEQ 421
           +E+
Sbjct: 64  EER 66


>BC040275-1|AAH40275.1| 1181|Homo sapiens RASGRF1 protein protein.
          Length = 1181

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -2

Query: 156 VLKDIFWCYLTTLNI-TEHTRNE*YHYKIGV*EHC*RNEAIDKLIQMSE 13
           VL D+F   L  LNI  E  RN  + Y + +  HC +N   DKL++  E
Sbjct: 318 VLADLFDILLPMLNIYQEFVRN--HQYSLQILAHCKQNRDFDKLLKHYE 364


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,565,881
Number of Sequences: 237096
Number of extensions: 1995857
Number of successful extensions: 4750
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4750
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)