Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0962
         (700 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001691-1|AAN71446.1|  279|Drosophila melanogaster RE58929p pro...    79   8e-15
AE013599-3997|AAF47303.1|  279|Drosophila melanogaster CG2765-PA...    79   8e-15
AE014296-2198|AAF49875.3| 1988|Drosophila melanogaster CG11008-P...    29   4.6  
AY122171-1|AAM52683.1| 1653|Drosophila melanogaster LD29171p pro...    29   8.0  
AE014134-2399|AAN10848.1| 1614|Drosophila melanogaster CG7578-PB...    29   8.0  
AE014134-2398|AAF53331.2| 1653|Drosophila melanogaster CG7578-PA...    29   8.0  

>BT001691-1|AAN71446.1|  279|Drosophila melanogaster RE58929p
           protein.
          Length = 279

 Score = 78.6 bits (185), Expect = 8e-15
 Identities = 43/66 (65%), Positives = 51/66 (77%)
 Frame = +2

Query: 143 MSFNTDISTKLENSRNTLRKIARNDGAEFSKQSILNDMEKFVKMVNTMDETVLVPSRLMN 322
           MS  TD+ TKLE SRN LR+IAR+D  +FSK SI+N MEKFVK VN MD+T+LVP RLM+
Sbjct: 1   MSGYTDL-TKLETSRNCLRRIARHDEQQFSKDSIVNVMEKFVKTVNIMDDTILVPCRLMD 59

Query: 323 LPQEGD 340
             Q GD
Sbjct: 60  -RQIGD 64



 Score = 28.7 bits (61), Expect = 8.0
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 350 FSMFSMLNDLKTELLWSGGDSQEQVERGRR 439
           F++++MLN LK +LLW+     +  +   +
Sbjct: 109 FNLYNMLNSLKKDLLWTANQEDDDQQHSEQ 138


>AE013599-3997|AAF47303.1|  279|Drosophila melanogaster CG2765-PA
           protein.
          Length = 279

 Score = 78.6 bits (185), Expect = 8e-15
 Identities = 43/66 (65%), Positives = 51/66 (77%)
 Frame = +2

Query: 143 MSFNTDISTKLENSRNTLRKIARNDGAEFSKQSILNDMEKFVKMVNTMDETVLVPSRLMN 322
           MS  TD+ TKLE SRN LR+IAR+D  +FSK SI+N MEKFVK VN MD+T+LVP RLM+
Sbjct: 1   MSGYTDL-TKLETSRNCLRRIARHDEQQFSKDSIVNVMEKFVKTVNIMDDTILVPCRLMD 59

Query: 323 LPQEGD 340
             Q GD
Sbjct: 60  -RQIGD 64



 Score = 28.7 bits (61), Expect = 8.0
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 350 FSMFSMLNDLKTELLWSGGDSQEQVERGRR 439
           F++++MLN LK +LLW+     +  +   +
Sbjct: 109 FNLYNMLNSLKKDLLWTANQEDDDQQHSEQ 138


>AE014296-2198|AAF49875.3| 1988|Drosophila melanogaster CG11008-PA
            protein.
          Length = 1988

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 14/62 (22%), Positives = 28/62 (45%)
 Frame = +2

Query: 137  QKMSFNTDISTKLENSRNTLRKIARNDGAEFSKQSILNDMEKFVKMVNTMDETVLVPSRL 316
            QK+    D+S K + +R +LR    N+      + ++N +       + M++ V  P+  
Sbjct: 1541 QKLDDVPDVSVKSKGTRKSLRASLNNEVPAIQPEPVINTVSSSENSTSKMEDVVTEPNDT 1600

Query: 317  MN 322
             N
Sbjct: 1601 KN 1602


>AY122171-1|AAM52683.1| 1653|Drosophila melanogaster LD29171p protein.
          Length = 1653

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -2

Query: 261  FSMSFRMLCFENSAPSLRAILRRVFL 184
            +S+   M+CF+   P LR++LRRVF+
Sbjct: 1617 YSLLCEMMCFDLK-PELRSVLRRVFM 1641


>AE014134-2399|AAN10848.1| 1614|Drosophila melanogaster CG7578-PB,
            isoform B protein.
          Length = 1614

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -2

Query: 261  FSMSFRMLCFENSAPSLRAILRRVFL 184
            +S+   M+CF+   P LR++LRRVF+
Sbjct: 1578 YSLLCEMMCFDLK-PELRSVLRRVFM 1602


>AE014134-2398|AAF53331.2| 1653|Drosophila melanogaster CG7578-PA,
            isoform A protein.
          Length = 1653

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -2

Query: 261  FSMSFRMLCFENSAPSLRAILRRVFL 184
            +S+   M+CF+   P LR++LRRVF+
Sbjct: 1617 YSLLCEMMCFDLK-PELRSVLRRVFM 1641


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,798,973
Number of Sequences: 53049
Number of extensions: 628925
Number of successful extensions: 1469
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1469
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)