Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0962
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006608-11|AAF39761.1|  360|Caenorhabditis elegans Hypothetical...    34   0.11 
U70851-7|AAB09130.3|  640|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AC006627-5|AAO38662.1|  529|Caenorhabditis elegans Hypothetical ...    28   5.6  
AC006627-4|AAK85459.1|  712|Caenorhabditis elegans Hypothetical ...    28   5.6  

>AC006608-11|AAF39761.1|  360|Caenorhabditis elegans Hypothetical
           protein C15F1.1 protein.
          Length = 360

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
 Frame = +2

Query: 149 FNTDISTKLENSRNTLRKIARNDGAEFS-KQSILNDMEKFVKMVNTMDETVLVPSRLMNL 325
           FN     K E  R         D   FS ++S+++D+E F + VNT D   +V +    +
Sbjct: 59  FNLKWKKKKETQRKQCSISTGKDRFRFSARRSLIDDVETFQRNVNTSDVISIVHTFQFII 118

Query: 326 PQEGDDDPFSMFSMLND-LKTELLWSGGDS 412
                 DP+S+++  N+ L T + +S  D+
Sbjct: 119 IFNRFPDPYSVYTKHNNTLFTYIFFSAADT 148


>U70851-7|AAB09130.3|  640|Caenorhabditis elegans Hypothetical
           protein M02B7.5 protein.
          Length = 640

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 22/54 (40%), Positives = 25/54 (46%)
 Frame = -2

Query: 465 LSVSLRSDTRLPRSTCSWLSPPDHSNSVFRSLSMENMLXGSSSPSCGKFIRRLG 304
           LS  LR D R  RST    SPP  +  V  +L   NM+    SP  G   RR G
Sbjct: 104 LSAQLRID-RAARSTTLDRSPPSPAPPVLVNLQNSNMIDSLMSPRLGN--RRFG 154


>AC006627-5|AAO38662.1|  529|Caenorhabditis elegans Hypothetical
           protein E01A2.2b protein.
          Length = 529

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +2

Query: 182 SRNTLRKIARNDGAEFSKQSILNDMEKFVKMVNTMDETVLVPSRLMNLPQEGDDD 346
           +R+  R++  N+G    KQ  +ND++  VK+    D+ +     L N   E D D
Sbjct: 159 NRDITRRVRTNNGIASHKQVAINDLKLAVKLTVLYDKKI----GLFNAADEADAD 209


>AC006627-4|AAK85459.1|  712|Caenorhabditis elegans Hypothetical
           protein E01A2.2a protein.
          Length = 712

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +2

Query: 182 SRNTLRKIARNDGAEFSKQSILNDMEKFVKMVNTMDETVLVPSRLMNLPQEGDDD 346
           +R+  R++  N+G    KQ  +ND++  VK+    D+ +     L N   E D D
Sbjct: 342 NRDITRRVRTNNGIASHKQVAINDLKLAVKLTVLYDKKI----GLFNAADEADAD 392


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,457,890
Number of Sequences: 27780
Number of extensions: 313975
Number of successful extensions: 926
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)