Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0962
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15240.1 68417.m02336 fringe-related protein + weak similarit...    29   3.0  
At1g61780.1 68414.m06967 postsynaptic protein-related similar to...    28   6.8  
At4g11070.1 68417.m01798 WRKY family transcription factor other ...    27   9.0  

>At4g15240.1 68417.m02336 fringe-related protein + weak similarity
           to Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 488

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
 Frame = -2

Query: 402 PDHSNSVFRSLSMENMLXGSSSPS-CGKFIRRLGTKTVSSMVLTILTNFSMSFRMLCFEN 226
           PD S S   SLS E ML  + SPS     IR +    +   ++ I+ ++  +FR     +
Sbjct: 10  PDSSLSRLDSLSPE-MLFPAKSPSLTSSRIRNIFLLLIFCFIIYIIFSYGTNFRREQISS 68

Query: 225 SAPSLRAI-LRRVFLLFS 175
            A SL     RR  LLFS
Sbjct: 69  IARSLSVFSTRRRHLLFS 86


>At1g61780.1 68414.m06967 postsynaptic protein-related similar to
           postsynaptic protein CRIPT GI:3098551 from [Rattus
           norvegicus]
          Length = 98

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 260 SPCHSGCSVLKIQHHHYGRFCAGCSCCFPILSIC 159
           S C + C + K Q H  G++C  C+    + ++C
Sbjct: 50  STCTTKCMICKQQVHQDGKYCHTCAYSKGVCAMC 83


>At4g11070.1 68417.m01798 WRKY family transcription factor other
           putative proteins, Arabidopsis thaliana
          Length = 313

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -2

Query: 390 NSVFRSLSMENMLXGSSSPSCGKFIRRLGTKTVSSMVLTILTNFSMSFRML 238
           N +   L     L GSSSPS       L T+   +++  I+++F  +  ML
Sbjct: 13  NELIHGLKAAKQLQGSSSPSLSASSSYLTTEIKENLLHNIVSSFKKAILML 63


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,507,970
Number of Sequences: 28952
Number of extensions: 282053
Number of successful extensions: 678
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)