Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0961
         (575 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4FSG8 Cluster: Putative uncharacterized protein; n=1; ...    42   0.014
UniRef50_A5Z1D8 Cluster: Putative uncharacterized protein; n=1; ...    36   0.68 

>UniRef50_A4FSG8 Cluster: Putative uncharacterized protein; n=1;
           Thermobia domestica|Rep: Putative uncharacterized
           protein - Thermobia domestica (firebrat)
          Length = 53

 Score = 41.5 bits (93), Expect = 0.014
 Identities = 18/29 (62%), Positives = 24/29 (82%)
 Frame = +3

Query: 261 LIKRKNYLRDNSVIFFFSSNKKKXLRPRC 347
           +I R +YLRDNSVIFF +S +++ LRPRC
Sbjct: 1   MIVRLSYLRDNSVIFFENSYRQERLRPRC 29


>UniRef50_A5Z1D8 Cluster: Putative uncharacterized protein; n=1;
           Haemaphysalis qinghaiensis|Rep: Putative uncharacterized
           protein - Haemaphysalis qinghaiensis
          Length = 30

 Score = 35.9 bits (79), Expect = 0.68
 Identities = 15/22 (68%), Positives = 17/22 (77%)
 Frame = +3

Query: 393 CSIIKILHDLSSNRCEPGXFLS 458
           CS  +ILHDLS +RCE G FLS
Sbjct: 9   CSTFEILHDLSLDRCESGWFLS 30


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 337,247,927
Number of Sequences: 1657284
Number of extensions: 4275458
Number of successful extensions: 4487
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4487
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39571085965
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)