Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0958
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   4.6  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   4.6  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    22   6.0  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    22   6.0  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    22   6.0  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 506 LKILQGYPXSILAADSDTLEVRQDDLVI 423
           L+ + G P S     S +  V+QDDL I
Sbjct: 137 LRCVNGIPVSSKTLASQSAYVQQDDLFI 164


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 506 LKILQGYPXSILAADSDTLEVRQDDLVI 423
           L+ + G P S     S +  V+QDDL I
Sbjct: 137 LRCVNGIPVSSKTLASQSAYVQQDDLFI 164


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 128 VLDTPDGHYFTKKFLITFHCTIHV 57
           V++  +G Y     LI F C +H+
Sbjct: 259 VIEAINGFYGVHTLLILFSCLLHL 282


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 488 TPGGSSTSVLVPGAGSGN 541
           +P  S + +  PGAGSGN
Sbjct: 88  SPTVSGSEMSSPGAGSGN 105


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 488 TPGGSSTSVLVPGAGSGN 541
           +P  S + +  PGAGSGN
Sbjct: 88  SPTVSGSEMSSPGAGSGN 105


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,450
Number of Sequences: 336
Number of extensions: 2954
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)