Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0958
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p...    30   0.31 
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    26   5.0  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    25   8.7  

>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 243 APYEVPQFPIEQIEKKLLIQRQLNVKAAECAQSV 344
           AP++VP F +E ++  +    QL  + A+CA ++
Sbjct: 41  APFDVPPFKVESLDVLISQSEQLTKQDAQCASAI 74


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -3

Query: 238 SSLGSSRGASAPTALVGLSLPPSSKNESVMISGDLEPS 125
           SS  S+    APT  V  + P SS NE+  +   LEPS
Sbjct: 613 SSANSNAPTPAPT--VNTTNPESSTNEATSVGPALEPS 648


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 483 GVPLEDLQQAXSYLVQALEMRKRYMEMSQQSFSPI 587
           G  +ED ++  SY++  L+   R+ +M   SF+P+
Sbjct: 327 GSEIED-EEVRSYILPPLKNTLRFSDMESSSFAPM 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,993
Number of Sequences: 5004
Number of extensions: 48122
Number of successful extensions: 155
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)