Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0958
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1697 - 28795521-28797328,28797430-28797550 31 0.98
01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,266... 29 3.0
06_03_1257 - 28790660-28790785,28791126-28791283,28791528-287916... 29 5.2
02_01_0293 + 1955439-1956457,1957002-1957322,1957405-1957411,195... 29 5.2
10_08_0954 + 21779561-21779639,21779780-21779862,21786887-217869... 28 6.9
07_01_1157 + 10954619-10954835,10956078-10957114 28 6.9
03_06_0108 + 31708713-31709079,31709258-31709822,31709933-317100... 28 6.9
07_01_0538 + 3982952-3983297,3983397-3983489,3983627-3983733 28 9.1
05_07_0003 + 26981956-26982190,26982258-26982318,26982739-269828... 28 9.1
04_03_0075 + 10726807-10727721,10728756-10729496 28 9.1
03_06_0644 + 35253858-35254112,35254301-35254390,35254475-352545... 28 9.1
>07_03_1697 - 28795521-28797328,28797430-28797550
Length = 642
Score = 31.1 bits (67), Expect = 0.98
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = -3
Query: 313 FSCLCMSSFFSICSIGNCGTS*GAESSLGSSRGA-SAPTALVGLSLPPSSKN 161
FS L + + G CGT+ A++ G+S+ SAP++L G LPP SK+
Sbjct: 18 FSVLQEPTGAPVYQCGGCGTTLRAKNRTGNSQEVISAPSSL-GSGLPPHSKH 68
>01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,
2668344-2668410,2668473-2668562,2668672-2668787,
2668999-2671924
Length = 1170
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/70 (28%), Positives = 35/70 (50%)
Frame = -2
Query: 518 RXRLLKILQGYPXSILAADSDTLEVRQDDLVIVIIGDPEPSRLFKHGCRACFAARE*THR 339
+ +LL I+ + ++ L R + LV++ P RLF +GC A E HR
Sbjct: 825 KLKLLHIIDMSNLESWSLNTGNLRGRSEQLVLM----PCLKRLFLNGCPKLRALPEDLHR 880
Query: 338 LSAFRRLNIQ 309
++ RR++I+
Sbjct: 881 IANLRRIHIE 890
>06_03_1257 -
28790660-28790785,28791126-28791283,28791528-28791604,
28791825-28791955
Length = 163
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = -1
Query: 564 TSPC-NACAFPEPAPGTXTLVEDPPGVPRK 478
T PC N C F +P P + PP PRK
Sbjct: 16 TQPCKNPCQFSQPTPAFPSRPLTPPPPPRK 45
>02_01_0293 +
1955439-1956457,1957002-1957322,1957405-1957411,
1957954-1958041,1958143-1958324,1958508-1958644,
1958790-1958856,1959132-1959246,1959390-1959501,
1960420-1960495,1960576-1960758,1961166-1961326,
1961463-1961532,1962721-1962928,1963015-1963304,
1963388-1963509,1963605-1963749,1964040-1964113,
1964464-1964911
Length = 1274
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 485 GTPGGSSTSVLVPG-AGSGNAQALHGDVPAELLAH 586
G GGS+T++++PG G GN + PA LLAH
Sbjct: 18 GGAGGSATAMMLPGPPGRGNGGCIDLS-PAGLLAH 51
>10_08_0954 +
21779561-21779639,21779780-21779862,21786887-21786946,
21786980-21787169,21787250-21787302,21787523-21787603,
21787703-21787819
Length = 220
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = -2
Query: 338 LSAFRR-LNIQLPLYE*FLL---DLFDWKLRDFIRRGEFIRKL 222
LSAFR L + L +Y + L DLFD K R I G+F+R L
Sbjct: 81 LSAFRHNLILSLEIYTEWTLQIFDLFDVKKRGVIDFGDFVRAL 123
>07_01_1157 + 10954619-10954835,10956078-10957114
Length = 417
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 243 APYEVPQFPIEQIEKKLLIQRQLNVKAA 326
+PY PQFP +E+K+ I+R L V+ +
Sbjct: 141 SPYS-PQFPQNNLERKIQIRRMLQVQGS 167
>03_06_0108 +
31708713-31709079,31709258-31709822,31709933-31710015,
31710231-31710319,31710486-31710559,31710654-31710704,
31710807-31710883,31711454-31712031,31712388-31712555,
31713364-31713417,31713456-31713467,31713554-31713715
Length = 759
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 494 GGSSTSVLVPGAGSGNAQAL-HGDVPAELLAHYGALH 601
GG ++PGAG+G+ AL H A + A + A+H
Sbjct: 178 GGFLQCAVIPGAGAGHDAALVHDQSAAAVAAGWAAMH 214
>07_01_0538 + 3982952-3983297,3983397-3983489,3983627-3983733
Length = 181
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 561 SPCNACAFPEPAPGTXTLVEDP 496
S C A P PAP T TL ++P
Sbjct: 112 SQCTAVPTPPPAPDTPTLADEP 133
>05_07_0003 +
26981956-26982190,26982258-26982318,26982739-26982833,
26983304-26983479,26983738-26983959,26984041-26984279,
26984786-26985311,26985407-26985680,26985759-26986410,
26986508-26986736,26986841-26987107,26987180-26987443,
26987526-26988194
Length = 1302
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +2
Query: 467 RRGYXRGTPGGSSTSVLVPGAGSGNAQALHGDVPAELL 580
+R RGT GS++ L AG +++H +VP+++L
Sbjct: 667 KRSLSRGTSFGSTSVHLTTAAGMIVPESMHTEVPSKVL 704
>04_03_0075 + 10726807-10727721,10728756-10729496
Length = 551
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Frame = +3
Query: 132 SRSPLIITDSFFDDGGSESPTSAVGAEAP-----RELPN---ELSAPYEVPQFPIEQIEK 287
SR+ +TDS +D +E T+ E+P E+P+ E + P E P+ PI +
Sbjct: 246 SRAMFALTDSLPEDEYAEEVTAVTAHESPETLLENEVPDFIKEEAEPCETPKLPIMEPHT 305
Query: 288 KLLIQR 305
LL ++
Sbjct: 306 YLLTKK 311
>03_06_0644 +
35253858-35254112,35254301-35254390,35254475-35254596,
35254731-35254830,35254955-35255001,35255178-35255256,
35255722-35255769
Length = 246
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +2
Query: 491 PGGSSTSVLVPGAGSG-NAQALHG 559
P G +T+VLVPG G+G + AL G
Sbjct: 71 PAGDATTVLVPGCGAGYDVVALSG 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,372,979
Number of Sequences: 37544
Number of extensions: 432389
Number of successful extensions: 1444
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1441
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -