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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0958
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1697 - 28795521-28797328,28797430-28797550                       31   0.98 
01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,266...    29   3.0  
06_03_1257 - 28790660-28790785,28791126-28791283,28791528-287916...    29   5.2  
02_01_0293 + 1955439-1956457,1957002-1957322,1957405-1957411,195...    29   5.2  
10_08_0954 + 21779561-21779639,21779780-21779862,21786887-217869...    28   6.9  
07_01_1157 + 10954619-10954835,10956078-10957114                       28   6.9  
03_06_0108 + 31708713-31709079,31709258-31709822,31709933-317100...    28   6.9  
07_01_0538 + 3982952-3983297,3983397-3983489,3983627-3983733           28   9.1  
05_07_0003 + 26981956-26982190,26982258-26982318,26982739-269828...    28   9.1  
04_03_0075 + 10726807-10727721,10728756-10729496                       28   9.1  
03_06_0644 + 35253858-35254112,35254301-35254390,35254475-352545...    28   9.1  

>07_03_1697 - 28795521-28797328,28797430-28797550
          Length = 642

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = -3

Query: 313 FSCLCMSSFFSICSIGNCGTS*GAESSLGSSRGA-SAPTALVGLSLPPSSKN 161
           FS L   +   +   G CGT+  A++  G+S+   SAP++L G  LPP SK+
Sbjct: 18  FSVLQEPTGAPVYQCGGCGTTLRAKNRTGNSQEVISAPSSL-GSGLPPHSKH 68


>01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,
            2668344-2668410,2668473-2668562,2668672-2668787,
            2668999-2671924
          Length = 1170

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/70 (28%), Positives = 35/70 (50%)
 Frame = -2

Query: 518  RXRLLKILQGYPXSILAADSDTLEVRQDDLVIVIIGDPEPSRLFKHGCRACFAARE*THR 339
            + +LL I+        + ++  L  R + LV++    P   RLF +GC    A  E  HR
Sbjct: 825  KLKLLHIIDMSNLESWSLNTGNLRGRSEQLVLM----PCLKRLFLNGCPKLRALPEDLHR 880

Query: 338  LSAFRRLNIQ 309
            ++  RR++I+
Sbjct: 881  IANLRRIHIE 890


>06_03_1257 -
           28790660-28790785,28791126-28791283,28791528-28791604,
           28791825-28791955
          Length = 163

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -1

Query: 564 TSPC-NACAFPEPAPGTXTLVEDPPGVPRK 478
           T PC N C F +P P   +    PP  PRK
Sbjct: 16  TQPCKNPCQFSQPTPAFPSRPLTPPPPPRK 45


>02_01_0293 +
           1955439-1956457,1957002-1957322,1957405-1957411,
           1957954-1958041,1958143-1958324,1958508-1958644,
           1958790-1958856,1959132-1959246,1959390-1959501,
           1960420-1960495,1960576-1960758,1961166-1961326,
           1961463-1961532,1962721-1962928,1963015-1963304,
           1963388-1963509,1963605-1963749,1964040-1964113,
           1964464-1964911
          Length = 1274

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 485 GTPGGSSTSVLVPG-AGSGNAQALHGDVPAELLAH 586
           G  GGS+T++++PG  G GN   +    PA LLAH
Sbjct: 18  GGAGGSATAMMLPGPPGRGNGGCIDLS-PAGLLAH 51


>10_08_0954 +
           21779561-21779639,21779780-21779862,21786887-21786946,
           21786980-21787169,21787250-21787302,21787523-21787603,
           21787703-21787819
          Length = 220

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = -2

Query: 338 LSAFRR-LNIQLPLYE*FLL---DLFDWKLRDFIRRGEFIRKL 222
           LSAFR  L + L +Y  + L   DLFD K R  I  G+F+R L
Sbjct: 81  LSAFRHNLILSLEIYTEWTLQIFDLFDVKKRGVIDFGDFVRAL 123


>07_01_1157 + 10954619-10954835,10956078-10957114
          Length = 417

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 243 APYEVPQFPIEQIEKKLLIQRQLNVKAA 326
           +PY  PQFP   +E+K+ I+R L V+ +
Sbjct: 141 SPYS-PQFPQNNLERKIQIRRMLQVQGS 167


>03_06_0108 +
           31708713-31709079,31709258-31709822,31709933-31710015,
           31710231-31710319,31710486-31710559,31710654-31710704,
           31710807-31710883,31711454-31712031,31712388-31712555,
           31713364-31713417,31713456-31713467,31713554-31713715
          Length = 759

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 494 GGSSTSVLVPGAGSGNAQAL-HGDVPAELLAHYGALH 601
           GG     ++PGAG+G+  AL H    A + A + A+H
Sbjct: 178 GGFLQCAVIPGAGAGHDAALVHDQSAAAVAAGWAAMH 214


>07_01_0538 + 3982952-3983297,3983397-3983489,3983627-3983733
          Length = 181

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 561 SPCNACAFPEPAPGTXTLVEDP 496
           S C A   P PAP T TL ++P
Sbjct: 112 SQCTAVPTPPPAPDTPTLADEP 133


>05_07_0003 +
           26981956-26982190,26982258-26982318,26982739-26982833,
           26983304-26983479,26983738-26983959,26984041-26984279,
           26984786-26985311,26985407-26985680,26985759-26986410,
           26986508-26986736,26986841-26987107,26987180-26987443,
           26987526-26988194
          Length = 1302

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 467 RRGYXRGTPGGSSTSVLVPGAGSGNAQALHGDVPAELL 580
           +R   RGT  GS++  L   AG    +++H +VP+++L
Sbjct: 667 KRSLSRGTSFGSTSVHLTTAAGMIVPESMHTEVPSKVL 704


>04_03_0075 + 10726807-10727721,10728756-10729496
          Length = 551

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
 Frame = +3

Query: 132 SRSPLIITDSFFDDGGSESPTSAVGAEAP-----RELPN---ELSAPYEVPQFPIEQIEK 287
           SR+   +TDS  +D  +E  T+    E+P      E+P+   E + P E P+ PI +   
Sbjct: 246 SRAMFALTDSLPEDEYAEEVTAVTAHESPETLLENEVPDFIKEEAEPCETPKLPIMEPHT 305

Query: 288 KLLIQR 305
            LL ++
Sbjct: 306 YLLTKK 311


>03_06_0644 +
           35253858-35254112,35254301-35254390,35254475-35254596,
           35254731-35254830,35254955-35255001,35255178-35255256,
           35255722-35255769
          Length = 246

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +2

Query: 491 PGGSSTSVLVPGAGSG-NAQALHG 559
           P G +T+VLVPG G+G +  AL G
Sbjct: 71  PAGDATTVLVPGCGAGYDVVALSG 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,372,979
Number of Sequences: 37544
Number of extensions: 432389
Number of successful extensions: 1444
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1441
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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