BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0958 (750 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 07_03_1697 - 28795521-28797328,28797430-28797550 31 0.98 01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,266... 29 3.0 06_03_1257 - 28790660-28790785,28791126-28791283,28791528-287916... 29 5.2 02_01_0293 + 1955439-1956457,1957002-1957322,1957405-1957411,195... 29 5.2 10_08_0954 + 21779561-21779639,21779780-21779862,21786887-217869... 28 6.9 07_01_1157 + 10954619-10954835,10956078-10957114 28 6.9 03_06_0108 + 31708713-31709079,31709258-31709822,31709933-317100... 28 6.9 07_01_0538 + 3982952-3983297,3983397-3983489,3983627-3983733 28 9.1 05_07_0003 + 26981956-26982190,26982258-26982318,26982739-269828... 28 9.1 04_03_0075 + 10726807-10727721,10728756-10729496 28 9.1 03_06_0644 + 35253858-35254112,35254301-35254390,35254475-352545... 28 9.1 >07_03_1697 - 28795521-28797328,28797430-28797550 Length = 642 Score = 31.1 bits (67), Expect = 0.98 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Frame = -3 Query: 313 FSCLCMSSFFSICSIGNCGTS*GAESSLGSSRGA-SAPTALVGLSLPPSSKN 161 FS L + + G CGT+ A++ G+S+ SAP++L G LPP SK+ Sbjct: 18 FSVLQEPTGAPVYQCGGCGTTLRAKNRTGNSQEVISAPSSL-GSGLPPHSKH 68 >01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895, 2668344-2668410,2668473-2668562,2668672-2668787, 2668999-2671924 Length = 1170 Score = 29.5 bits (63), Expect = 3.0 Identities = 20/70 (28%), Positives = 35/70 (50%) Frame = -2 Query: 518 RXRLLKILQGYPXSILAADSDTLEVRQDDLVIVIIGDPEPSRLFKHGCRACFAARE*THR 339 + +LL I+ + ++ L R + LV++ P RLF +GC A E HR Sbjct: 825 KLKLLHIIDMSNLESWSLNTGNLRGRSEQLVLM----PCLKRLFLNGCPKLRALPEDLHR 880 Query: 338 LSAFRRLNIQ 309 ++ RR++I+ Sbjct: 881 IANLRRIHIE 890 >06_03_1257 - 28790660-28790785,28791126-28791283,28791528-28791604, 28791825-28791955 Length = 163 Score = 28.7 bits (61), Expect = 5.2 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%) Frame = -1 Query: 564 TSPC-NACAFPEPAPGTXTLVEDPPGVPRK 478 T PC N C F +P P + PP PRK Sbjct: 16 TQPCKNPCQFSQPTPAFPSRPLTPPPPPRK 45 >02_01_0293 + 1955439-1956457,1957002-1957322,1957405-1957411, 1957954-1958041,1958143-1958324,1958508-1958644, 1958790-1958856,1959132-1959246,1959390-1959501, 1960420-1960495,1960576-1960758,1961166-1961326, 1961463-1961532,1962721-1962928,1963015-1963304, 1963388-1963509,1963605-1963749,1964040-1964113, 1964464-1964911 Length = 1274 Score = 28.7 bits (61), Expect = 5.2 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%) Frame = +2 Query: 485 GTPGGSSTSVLVPG-AGSGNAQALHGDVPAELLAH 586 G GGS+T++++PG G GN + PA LLAH Sbjct: 18 GGAGGSATAMMLPGPPGRGNGGCIDLS-PAGLLAH 51 >10_08_0954 + 21779561-21779639,21779780-21779862,21786887-21786946, 21786980-21787169,21787250-21787302,21787523-21787603, 21787703-21787819 Length = 220 Score = 28.3 bits (60), Expect = 6.9 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 4/43 (9%) Frame = -2 Query: 338 LSAFRR-LNIQLPLYE*FLL---DLFDWKLRDFIRRGEFIRKL 222 LSAFR L + L +Y + L DLFD K R I G+F+R L Sbjct: 81 LSAFRHNLILSLEIYTEWTLQIFDLFDVKKRGVIDFGDFVRAL 123 >07_01_1157 + 10954619-10954835,10956078-10957114 Length = 417 Score = 28.3 bits (60), Expect = 6.9 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = +3 Query: 243 APYEVPQFPIEQIEKKLLIQRQLNVKAA 326 +PY PQFP +E+K+ I+R L V+ + Sbjct: 141 SPYS-PQFPQNNLERKIQIRRMLQVQGS 167 >03_06_0108 + 31708713-31709079,31709258-31709822,31709933-31710015, 31710231-31710319,31710486-31710559,31710654-31710704, 31710807-31710883,31711454-31712031,31712388-31712555, 31713364-31713417,31713456-31713467,31713554-31713715 Length = 759 Score = 28.3 bits (60), Expect = 6.9 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Frame = +2 Query: 494 GGSSTSVLVPGAGSGNAQAL-HGDVPAELLAHYGALH 601 GG ++PGAG+G+ AL H A + A + A+H Sbjct: 178 GGFLQCAVIPGAGAGHDAALVHDQSAAAVAAGWAAMH 214 >07_01_0538 + 3982952-3983297,3983397-3983489,3983627-3983733 Length = 181 Score = 27.9 bits (59), Expect = 9.1 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = -1 Query: 561 SPCNACAFPEPAPGTXTLVEDP 496 S C A P PAP T TL ++P Sbjct: 112 SQCTAVPTPPPAPDTPTLADEP 133 >05_07_0003 + 26981956-26982190,26982258-26982318,26982739-26982833, 26983304-26983479,26983738-26983959,26984041-26984279, 26984786-26985311,26985407-26985680,26985759-26986410, 26986508-26986736,26986841-26987107,26987180-26987443, 26987526-26988194 Length = 1302 Score = 27.9 bits (59), Expect = 9.1 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = +2 Query: 467 RRGYXRGTPGGSSTSVLVPGAGSGNAQALHGDVPAELL 580 +R RGT GS++ L AG +++H +VP+++L Sbjct: 667 KRSLSRGTSFGSTSVHLTTAAGMIVPESMHTEVPSKVL 704 >04_03_0075 + 10726807-10727721,10728756-10729496 Length = 551 Score = 27.9 bits (59), Expect = 9.1 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 8/66 (12%) Frame = +3 Query: 132 SRSPLIITDSFFDDGGSESPTSAVGAEAP-----RELPN---ELSAPYEVPQFPIEQIEK 287 SR+ +TDS +D +E T+ E+P E+P+ E + P E P+ PI + Sbjct: 246 SRAMFALTDSLPEDEYAEEVTAVTAHESPETLLENEVPDFIKEEAEPCETPKLPIMEPHT 305 Query: 288 KLLIQR 305 LL ++ Sbjct: 306 YLLTKK 311 >03_06_0644 + 35253858-35254112,35254301-35254390,35254475-35254596, 35254731-35254830,35254955-35255001,35255178-35255256, 35255722-35255769 Length = 246 Score = 27.9 bits (59), Expect = 9.1 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%) Frame = +2 Query: 491 PGGSSTSVLVPGAGSG-NAQALHG 559 P G +T+VLVPG G+G + AL G Sbjct: 71 PAGDATTVLVPGCGAGYDVVALSG 94 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 20,372,979 Number of Sequences: 37544 Number of extensions: 432389 Number of successful extensions: 1444 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 1384 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1441 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1992480932 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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