Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0958
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46189| Best HMM Match : bZIP_2 (HMM E-Value=3.3)                    61   8e-10
SB_5803| Best HMM Match : S-antigen (HMM E-Value=7.5)                  32   0.43 
SB_24802| Best HMM Match : Phage_fiber_C (HMM E-Value=1.1)             28   7.0  
SB_19993| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_27477| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_46189| Best HMM Match : bZIP_2 (HMM E-Value=3.3)
          Length = 445

 Score = 61.3 bits (142), Expect = 8e-10
 Identities = 38/125 (30%), Positives = 66/125 (52%)
 Frame = +3

Query: 246 PYEVPQFPIEQIEKKLLIQRQLNVKAAECAQSVRXXXXXXXXXXXXXXXXXRLRVPDDDD 425
           P+E+P+ PIEQ+E K   + ++N++    ++ +R                    +     
Sbjct: 99  PFEIPEHPIEQLELK---KEEINLERQH-SKIMRGNSVSGPQLAGERSPSSTESLLGYGG 154

Query: 426 DEIILPHFQRVAISGEDTXGVPLEDLQQAXSYLVQALEMRKRYMEMSQQSFSPITARFIR 605
               +P+F RV+ISG +T GVP+E+L+QA   LV+AL +R +YM +S QS    T+  + 
Sbjct: 155 SLDSMPYFHRVSISGGNTSGVPVEELKQAAKLLVEALFIRFKYMSLSLQSICSATSTALS 214

Query: 606 SMDAD 620
           ++  D
Sbjct: 215 TVHDD 219


>SB_5803| Best HMM Match : S-antigen (HMM E-Value=7.5)
          Length = 218

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 494 GGSSTSVLVPGAGSGNAQALHGDVPAELLAHYGALHQE 607
           GG   +V+V G G GN  +L G+   E+ A  G  ++E
Sbjct: 149 GGQGKNVMVKGGGQGNTVSLKGEAGKEISADEGVANKE 186


>SB_24802| Best HMM Match : Phage_fiber_C (HMM E-Value=1.1)
          Length = 1072

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +3

Query: 114 RGVQDGSRSPLIITDSFFDDGGSE---SPTSAVGAEAPRELPNELSAPYEVPQF 266
           R   +GS +P   TD    + G+E    P SA G+EA  E+ + L +P E P F
Sbjct: 295 RASDEGSVTP---TDRGTSEQGNELRLDPGSASGSEAMCEVDSALHSPSEAPAF 345


>SB_19993| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = -2

Query: 212 LRPHGARRAFTAAIIEERIGDD---QR*SGAVLDTPDGH-YFTKK 90
           +RP GA  A T  ++E+R   +    + +G V  TPDG  YF  K
Sbjct: 7   VRPKGAESAITRQVVEDRFIIEVSITKCTGLVYSTPDGKCYFRHK 51


>SB_27477| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1800

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +3

Query: 90  LFGEIMSIRGVQDGSRSPLIITDSFFDDGGSESPTSAVGAEAPRELPNELSAP 248
           L GE ++ RG     +  L+  +    +G +E+P+ +  A +P  +PN ++ P
Sbjct: 439 LKGEGLAKRGKSAALKELLLFAELMRTNGKTETPSVSATASSPGLVPNGVTGP 491


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,892,793
Number of Sequences: 59808
Number of extensions: 424960
Number of successful extensions: 1031
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)