Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0958
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46753-6|AAO21474.1|  740|Caenorhabditis elegans Hypothetical pr...    56   3e-08
U46753-5|ABB88235.1|  803|Caenorhabditis elegans Hypothetical pr...    56   3e-08
U46753-4|AAO21475.1|  764|Caenorhabditis elegans Hypothetical pr...    56   3e-08
U47144-1|AAB52616.2|  448|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z81136-3|CAD27610.1|  196|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AF324055-1|AAK01416.1|  151|Caenorhabditis elegans Ly-6-related ...    28   6.2  
Z81555-6|CAJ85762.1|  709|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z81555-5|CAB04517.2|  694|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z46676-5|CAA86667.3|  418|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z30662-11|CAE17937.1|  358|Caenorhabditis elegans Hypothetical p...    28   8.1  
Z30317-8|CAE17925.1|  358|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U24189-2|AAC47513.1|  418|Caenorhabditis elegans actin-related p...    28   8.1  

>U46753-6|AAO21474.1|  740|Caenorhabditis elegans Hypothetical
           protein C34F11.3a protein.
          Length = 740

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 24/53 (45%), Positives = 36/53 (67%)
 Frame = +3

Query: 444 HFQRVAISGEDTXGVPLEDLQQAXSYLVQALEMRKRYMEMSQQSFSPITARFI 602
           ++QR+AI+GE+  GVPLEDL+ A  +L++AL +R +YME     F   T  F+
Sbjct: 101 NYQRMAITGEELSGVPLEDLKTASGHLIEALHLRSKYMERIGNQFPSTTRNFL 153


>U46753-5|ABB88235.1|  803|Caenorhabditis elegans Hypothetical
           protein C34F11.3c protein.
          Length = 803

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 24/53 (45%), Positives = 36/53 (67%)
 Frame = +3

Query: 444 HFQRVAISGEDTXGVPLEDLQQAXSYLVQALEMRKRYMEMSQQSFSPITARFI 602
           ++QR+AI+GE+  GVPLEDL+ A  +L++AL +R +YME     F   T  F+
Sbjct: 164 NYQRMAITGEELSGVPLEDLKTASGHLIEALHLRSKYMERIGNQFPSTTRNFL 216


>U46753-4|AAO21475.1|  764|Caenorhabditis elegans Hypothetical
           protein C34F11.3b protein.
          Length = 764

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 24/53 (45%), Positives = 36/53 (67%)
 Frame = +3

Query: 444 HFQRVAISGEDTXGVPLEDLQQAXSYLVQALEMRKRYMEMSQQSFSPITARFI 602
           ++QR+AI+GE+  GVPLEDL+ A  +L++AL +R +YME     F   T  F+
Sbjct: 125 NYQRMAITGEELSGVPLEDLKTASGHLIEALHLRSKYMERIGNQFPSTTRNFL 177


>U47144-1|AAB52616.2|  448|Caenorhabditis elegans Hypothetical
           protein ZC53.1 protein.
          Length = 448

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 135 RSPLIITDSFFDDGGSESPTSAVGAEAPRELPNELSAPYEVPQ 263
           R+ +++TD   DDG S+ P  +   +  R+ P E S  YE P+
Sbjct: 251 RAEILVTD---DDGTSQQPRGSARGDNKRKSPQEPSMSYEGPK 290


>Z81136-3|CAD27610.1|  196|Caenorhabditis elegans Hypothetical
           protein W02B8.5 protein.
          Length = 196

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -2

Query: 425 IVIIGDPEPSRLFKHGCRACFAARE-*THRLSAFRRLNI 312
           +V++G P   RL+  GC    A R    H LS F R +I
Sbjct: 102 LVVMGQPTGHRLYMRGCALTIARRGLNNHTLSMFDRYDI 140


>AF324055-1|AAK01416.1|  151|Caenorhabditis elegans Ly-6-related
           protein HOT-3 protein.
          Length = 151

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -2

Query: 425 IVIIGDPEPSRLFKHGCRACFAARE-*THRLSAFRRLNI 312
           +V++G P   RL+  GC    A R    H LS F R +I
Sbjct: 57  LVVMGQPTGHRLYMRGCALTIARRGLNNHTLSMFDRYDI 95


>Z81555-6|CAJ85762.1|  709|Caenorhabditis elegans Hypothetical
           protein F58E10.1b protein.
          Length = 709

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +3

Query: 90  LFGEIMSIRGVQDGSRSPLIITDSFFDDGGSE 185
           +F ++MS+R + +GS  PL+  +  +D+  S+
Sbjct: 266 VFNDVMSVRSLAEGSDDPLLDDEFRYDEEDSD 297


>Z81555-5|CAB04517.2|  694|Caenorhabditis elegans Hypothetical
           protein F58E10.1a protein.
          Length = 694

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +3

Query: 90  LFGEIMSIRGVQDGSRSPLIITDSFFDDGGSE 185
           +F ++MS+R + +GS  PL+  +  +D+  S+
Sbjct: 251 VFNDVMSVRSLAEGSDDPLLDDEFRYDEEDSD 282


>Z46676-5|CAA86667.3|  418|Caenorhabditis elegans Hypothetical
           protein C08B11.6 protein.
          Length = 418

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 150 ITDSFFDDGGSESPTSAVGAEAPRELPNEL 239
           +T   FD+GG       + +E+PR +PN +
Sbjct: 3   LTTIIFDNGGHNMKIGTIDSESPRLVPNSI 32


>Z30662-11|CAE17937.1|  358|Caenorhabditis elegans Hypothetical
           protein T16G12.9 protein.
          Length = 358

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/64 (28%), Positives = 34/64 (53%)
 Frame = +3

Query: 156 DSFFDDGGSESPTSAVGAEAPRELPNELSAPYEVPQFPIEQIEKKLLIQRQLNVKAAECA 335
           + F  +  +ES +S+V  EA     +  +   E   FP+++ ++   IQR +N   AEC 
Sbjct: 283 EEFKHELNNESSSSSVAEEAMEVAVDYKNEDDE--DFPMDE-DETTQIQRIINYSRAECG 339

Query: 336 QSVR 347
           +++R
Sbjct: 340 ENIR 343


>Z30317-8|CAE17925.1|  358|Caenorhabditis elegans Hypothetical
           protein T16G12.9 protein.
          Length = 358

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/64 (28%), Positives = 34/64 (53%)
 Frame = +3

Query: 156 DSFFDDGGSESPTSAVGAEAPRELPNELSAPYEVPQFPIEQIEKKLLIQRQLNVKAAECA 335
           + F  +  +ES +S+V  EA     +  +   E   FP+++ ++   IQR +N   AEC 
Sbjct: 283 EEFKHELNNESSSSSVAEEAMEVAVDYKNEDDE--DFPMDE-DETTQIQRIINYSRAECG 339

Query: 336 QSVR 347
           +++R
Sbjct: 340 ENIR 343


>U24189-2|AAC47513.1|  418|Caenorhabditis elegans actin-related
           protein-like protein.
          Length = 418

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 150 ITDSFFDDGGSESPTSAVGAEAPRELPNEL 239
           +T   FD+GG       + +E+PR +PN +
Sbjct: 3   LTTIIFDNGGHNMKIGTIDSESPRLVPNSI 32


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,648,007
Number of Sequences: 27780
Number of extensions: 299417
Number of successful extensions: 854
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)