Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0958
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g23820.1 68417.m03425 glycoside hydrolase family 28 protein /... 32 0.47
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 31 1.1
At5g41870.1 68418.m05098 glycoside hydrolase family 28 protein /... 29 3.3
At1g14200.1 68414.m01680 zinc finger (C3HC4-type RING finger) fa... 29 3.3
At5g38450.1 68418.m04648 cytochrome P450 family protein similar ... 28 5.8
At3g12340.2 68416.m01539 immunophilin, putative / FKBP-type pept... 28 5.8
At3g12340.1 68416.m01538 immunophilin, putative / FKBP-type pept... 28 5.8
At1g67710.1 68414.m07727 two-component responsive regulator fami... 28 5.8
At1g51190.1 68414.m05758 ovule development protein, putative sim... 28 5.8
At3g11290.1 68416.m01373 expressed protein 28 7.6
At2g35000.1 68415.m04294 zinc finger (C3HC4-type RING finger) fa... 28 7.6
At2g19220.1 68415.m02243 hypothetical protein 28 7.6
>At4g23820.1 68417.m03425 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein weak
similarity to polygalacturonase PG1 [Glycine max]
GI:5669846; contains PF00295: Glycosyl hydrolases family
28
Length = 444
Score = 31.9 bits (69), Expect = 0.47
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -2
Query: 191 RAFTAAIIEERIGDDQR*SGAVLDTPDGHYFTKKFLITFHCTIHV-RGCQISTFMQT 24
+AF AAI RI +R G +L P G Y T+ F +T H T+++ +G I T
Sbjct: 58 KAFRAAIY--RIQHLKRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKGAVIRAVQDT 112
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces
cerevisiae]
Length = 1252
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 743 APWARGKGQFPRNPCL*MEGGLY 675
APWA+ QFP+NP L M G ++
Sbjct: 122 APWAKLLSQFPQNPHLVMRGSVF 144
>At5g41870.1 68418.m05098 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein weak
similarity to polygalacturonase PG1 [Glycine max]
GI:5669846; contains PF00295: Glycosyl hydrolases family
28
Length = 449
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -2
Query: 191 RAFTAAIIEERIGDDQR*SGAVLDTPDGHYFTKKFLITFHCTIHV 57
+AF +AI R ++ G +L P G Y T+ F +T H T+++
Sbjct: 62 KAFNSAIDRIRNSNNSN-EGTLLYVPRGVYLTQSFNLTSHMTLYL 105
>At1g14200.1 68414.m01680 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 179
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +3
Query: 96 GEIMSIRGVQDGSRSPLIITDSFFDDGGSESPTSAVGAE 212
G+ +S R V GSRS L D FF DGG + + A+ +E
Sbjct: 54 GDPLSPRFVMIGSRSGL---DDFFSDGGKQGRSPALKSE 89
>At5g38450.1 68418.m04648 cytochrome P450 family protein similar to
cytochrome P450 72A1 (SP:Q05047) [Catharanthus roseus]
Length = 518
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 509 SVLVPGAGSGNAQALHGDVPAELLAHYGALHQEHGR 616
S +V + S + ++H D+ LL HY A +++G+
Sbjct: 60 SAMVSQSASKDCDSIHHDIVGRLLPHYVAWSKQYGK 95
>At3g12340.2 68416.m01539 immunophilin, putative / FKBP-type
peptidyl-prolyl cis-trans isomerase, putative contains
Pfam profile: PF00254, FKBP-type peptidyl-prolyl
cis-trans isomerases
Length = 186
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -3
Query: 259 GTS*GAESSLGSSRGASAPTALVGLSLPPSSKNESVMISGDLEPSWTPLMDII 101
GT AE + +P+ G+ LPP S E+V +EP ++P + I
Sbjct: 74 GTGKKAEVRKSKKGSSGSPSKGTGIYLPPVSLKEAVSGGLKVEPGFSPFSERI 126
>At3g12340.1 68416.m01538 immunophilin, putative / FKBP-type
peptidyl-prolyl cis-trans isomerase, putative contains
Pfam profile: PF00254, FKBP-type peptidyl-prolyl
cis-trans isomerases
Length = 694
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -3
Query: 259 GTS*GAESSLGSSRGASAPTALVGLSLPPSSKNESVMISGDLEPSWTPLMDII 101
GT AE + +P+ G+ LPP S E+V +EP ++P + I
Sbjct: 74 GTGKKAEVRKSKKGSSGSPSKGTGIYLPPVSLKEAVSGGLKVEPGFSPFSERI 126
>At1g67710.1 68414.m07727 two-component responsive regulator family
protein / response regulator family protein contains
Pfam profile: PF00072 response regulator receiver
domain; contains similarity to response regulator
proteins from [Arabidopsis thaliana]
Length = 521
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 141 PLIITDSFFDDGGSESPTSAVGAEAPRELPNELSAPYEVP 260
P++ +SF S +S V AP + E+ PYE P
Sbjct: 360 PVLYENSFLQQQPLPSQSSYVANSAPSLMEEEMKPPYETP 399
>At1g51190.1 68414.m05758 ovule development protein, putative
similar to ovule development protein AINTEGUMENTA
(GI:1209099) [Arabidopsis thaliana]
Length = 568
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 271 IGNCGTS*GAESSLGSSRGASAPTALVGLSLPPS 170
+GN G G+ S++GSS P V +PPS
Sbjct: 506 LGNNGIGIGSSSTVGSSAEEEFPAVKVDYDMPPS 539
>At3g11290.1 68416.m01373 expressed protein
Length = 460
Score = 27.9 bits (59), Expect = 7.6
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 493 WRIFNKRXRTWCRLWKCASVTW 558
W K+ + WCRL +C+ + W
Sbjct: 55 WDTMIKQWKIWCRLVQCSDMQW 76
>At2g35000.1 68415.m04294 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 378
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 434 HLAALPACRYQRRGYXRGTPGGSSTSVLVPGAGSGNAQALH 556
H+A LP R R GY G+ G ++ + N + LH
Sbjct: 293 HVALLPQARSSRSGYRSGSVGSERSAFPYGRKSNNNNRRLH 333
>At2g19220.1 68415.m02243 hypothetical protein
Length = 439
Score = 27.9 bits (59), Expect = 7.6
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +1
Query: 493 WRIFNKRXRTWCRLWKCASVTW 558
W K+ + WCRL +C + W
Sbjct: 54 WDTMIKQWKIWCRLVQCKDIKW 75
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,069,335
Number of Sequences: 28952
Number of extensions: 290762
Number of successful extensions: 840
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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