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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0954
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1191 + 24690936-24691029,24691184-24691377                       33   0.24 
03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678...    32   0.56 
01_05_0490 + 22672241-22674679                                         31   0.74 
03_06_0422 + 33818887-33819996                                         31   0.98 
07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462     30   1.7  
09_04_0601 + 18889264-18889334,18889451-18889491,18889600-18889784     30   2.3  
06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247     29   3.0  
12_02_1152 + 26515422-26515460,26516317-26516454,26518647-265188...    29   3.9  
02_02_0059 - 6432945-6433115,6433975-6434061,6434585-6434787,643...    29   3.9  
11_01_0662 - 5389746-5390548,5390727-5391368,5391624-5391659,539...    28   6.9  
02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505     28   6.9  
11_01_0710 - 5830475-5830595,5831498-5834124                           28   9.1  
10_01_0078 - 1012031-1012084,1012998-1013105,1013610-1013661,101...    28   9.1  
08_02_1172 + 24898290-24899141,24900864-24901328                       28   9.1  
02_01_0775 + 5775949-5777385                                           28   9.1  

>07_03_1191 + 24690936-24691029,24691184-24691377
          Length = 95

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +1

Query: 7   RXVTTVSIELILALRFISVVARRTL*KQNAVCRQTDRPCSQV-CHLLQLCTGATTCSSTH 183
           R  + V++ LI AL F +V       +   VC++T+  C+Q  CH + L  G T  S   
Sbjct: 10  RASSLVTLLLIAALLFPAVCYAHV--EAKTVCQKTEYGCTQEKCHQMCLGDGRTVASQYC 67

Query: 184 PYTDGTCC 207
            + D  CC
Sbjct: 68  RHYDTQCC 75


>03_02_0994 -
           13067254-13067379,13067483-13067521,13067824-13067893,
           13068025-13068116,13068237-13068319,13068590-13068633,
           13068682-13068800,13068883-13068915,13069152-13069239,
           13069364-13069413
          Length = 247

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 97  VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALC 225
           VC  T++P +QVC+   +C G   CS+   + D   C    LC
Sbjct: 51  VC-DTEQPVAQVCYNCGVCMGEYFCSACKFFDDDVRCRCCLLC 92


>01_05_0490 + 22672241-22674679
          Length = 812

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 240 RPHRSLRTLTLLPNSLVLVQRQWE*LVPELVLEQSSAPSSSAMPGTPP 383
           +P + + T+T  P  L    R+W   + E+VLEQ S    + MP  PP
Sbjct: 296 QPQQPVETVTPTPPPLAR-SRRWNPEMLEVVLEQESRVEETTMPPPPP 342


>03_06_0422 + 33818887-33819996
          Length = 369

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = -3

Query: 484 ESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTS 314
           E   ++ER  + E+T SL    + N   E ++L+G       D+  +D SNTSSG S
Sbjct: 156 ERMRERERERRRERTESLILINSNN---EAIILQGT---FGPDDNQDDSSNTSSGVS 206


>07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462
          Length = 106

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 97  VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDG 198
           +CRQ +  C   CH++ LC G  + S   P T G
Sbjct: 38  ICRQVEAGCFAHCHIV-LCKGEPSRSPFRPVTSG 70


>09_04_0601 + 18889264-18889334,18889451-18889491,18889600-18889784
          Length = 98

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -2

Query: 137 WQTWLQGRSVWRQTA--FCFYKVRRATTEINRKARINSMLT 21
           +Q W    SV+   A  F FYK+   ++E++R+ + NS++T
Sbjct: 47  YQLWKAAPSVFVDAALAFVFYKLSVVSSELHRQRKTNSLIT 87


>06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247
          Length = 974

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
 Frame = -3

Query: 532 LICRMAVVVFLKVNSLESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDE 353
           L C + +   +   +  ++       +T   +   Q  T NG  E L   GG   ++ + 
Sbjct: 331 LACIIVLKAIISCQTYSNDRSNNVEEQTSTGNCRAQINTSNGGAESLSSNGGAESVSSNG 390

Query: 352 GAEDCSNTSSG--TSYSHCRCTSTNEFGSRVN 263
           GAE  S+ +    T+ +    T T+  G++ N
Sbjct: 391 GAESVSSNARAQPTTTNGGEETKTSNAGAQKN 422


>12_02_1152 +
           26515422-26515460,26516317-26516454,26518647-26518809,
           26519165-26519213,26519315-26519390,26520348-26520473
          Length = 196

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = -3

Query: 274 SRVNVLSDRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGRPGCRGDQSG 104
           S +N+++ RCG    HC  L   +   L       +  H   + E G  GC  DQSG
Sbjct: 20  SMLNIVTVRCG----HCTNLLSVNLRGLMHSAPALQDHHHHHLQESGLSGCFRDQSG 72


>02_02_0059 -
           6432945-6433115,6433975-6434061,6434585-6434787,
           6435281-6435392,6435473-6435517,6435622-6435726,
           6435946-6435996,6436026-6436103,6437258-6437313,
           6437784-6437853,6438288-6438392,6438525-6438637,
           6439354-6439534,6439635-6440390
          Length = 710

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +3

Query: 99  LPPD*SPLQPGLPSSATLHWCDHLQQYPPIHRWYLLSLHSSLQCGPSRPHRS--LRTLTL 272
           +PP   PL+P +PSS+  H    LQ      +  L  +HS      +RP  S  L    L
Sbjct: 183 VPPPPPPLEPPVPSSSDYHAKPPLQAV----KSSLFPIHSGSPAATARPPSSHTLHQAHL 238

Query: 273 LPNS 284
           +PN+
Sbjct: 239 MPNA 242


>11_01_0662 -
           5389746-5390548,5390727-5391368,5391624-5391659,
           5392314-5392377
          Length = 514

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 493 NSLESEEQQERHHKTEQTHSLRQ 425
           NS+   E QE+ H  E+TH LRQ
Sbjct: 62  NSIFYSESQEQKHVKEETHRLRQ 84


>02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505
          Length = 213

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -2

Query: 251 PMWSGRTALQRAV*GQQVPSVYGWVLLQVVAPVQSCRRWQTWLQGRSVW 105
           P+W G   ++ AV G + P+ +G+   ++  P Q+    + W+    VW
Sbjct: 8   PVWHGVWMVEDAVTGDEFPAWHGYGRRRMQPPGQAPAWCRAWIAKDVVW 56


>11_01_0710 - 5830475-5830595,5831498-5834124
          Length = 915

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = +3

Query: 60  SCRAPHLIKTKCCLPPD*SPLQPGLPS--SATLHWCDHLQQYPPI 188
           SC   +L+   C LP     L   LP+    T+HWC  L   P I
Sbjct: 668 SCSVTNLVVKFCTLPLSQWSLLHHLPALRHLTIHWCADLTSSPEI 712


>10_01_0078 -
           1012031-1012084,1012998-1013105,1013610-1013661,
           1013926-1016603
          Length = 963

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -3

Query: 655 NCIPVDAHCRCNTHQSLHHYEGEVSKHSI-PWLSTPDSIH*NLICRM 518
           N I V A+C+    +S  H  GE++K  I P ++  DSI    +CRM
Sbjct: 471 NSIMVTAYCKIGEIESALHLFGEMAKDGIEPSIAVYDSII-VCLCRM 516


>08_02_1172 + 24898290-24899141,24900864-24901328
          Length = 438

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +3

Query: 99  LPPD*SPLQPGLPSSATLHWCDHLQQYPPIHRWYLLSLHSSLQCGPSRPHR-SLRTLTLL 275
           LPP  + L P            H  QYPP   ++   +H   Q  PS P R +L  L+L 
Sbjct: 40  LPPPYAALYPTAGGVGVGVGAHHHHQYPPAAFFHPPPVHQQHQAPPSPPLREALPLLSLS 99

Query: 276 P 278
           P
Sbjct: 100 P 100


>02_01_0775 + 5775949-5777385
          Length = 478

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/39 (33%), Positives = 15/39 (38%)
 Frame = -3

Query: 184 GGYCCKWSHQCRVAEDGRPGCRGDQSGGRQHFVFIRCGA 68
           GG   +W  Q RV   G  GC     G       + CGA
Sbjct: 347 GGMVVEWCDQVRVLSHGAVGCFVTHCGWNSTLEAVACGA 385


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,145,422
Number of Sequences: 37544
Number of extensions: 452787
Number of successful extensions: 1426
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1425
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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