Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0953
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    26   0.37 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    24   1.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    24   1.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    24   1.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    24   1.1  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    23   2.6  
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    23   3.4  

>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 107 LRLPVWKFSLCWTGGHYFSVYFLFWFDINRNI 12
           L L ++K SL  T   YF++Y + W+D ++ I
Sbjct: 264 LCLTMYKLSL--TEDLYFAIYEMHWYDASKQI 293


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -3

Query: 169 DTTIVFSGSPMAY--FVNLFSMFFACLFGSF 83
           DTT+  +     Y   +N+F+ +FA +FG F
Sbjct: 367 DTTMDSNDMTAIYVLLINIFASYFAYIFGKF 397


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -3

Query: 169 DTTIVFSGSPMAY--FVNLFSMFFACLFGSF 83
           DTT+  +     Y   +N+F+ +FA +FG F
Sbjct: 367 DTTMDSNDMTAIYVLLINIFASYFAYIFGKF 397


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -3

Query: 169 DTTIVFSGSPMAY--FVNLFSMFFACLFGSF 83
           DTT+  +     Y   +N+F+ +FA +FG F
Sbjct: 367 DTTMDSNDMTAIYVLLINIFASYFAYIFGKF 397


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -3

Query: 169 DTTIVFSGSPMAY--FVNLFSMFFACLFGSF 83
           DTT+  +     Y   +N+F+ +FA +FG F
Sbjct: 367 DTTMDSNDMTAIYVLLINIFASYFAYIFGKF 397


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -1

Query: 138 WHISLTYFQCSSLACLEVFSLLDRW 64
           W+I  T     ++ CL ++S+ ++W
Sbjct: 40  WYICYTIGVIITIGCLCIWSIFNKW 64


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -2

Query: 173 SRYNHRLLWVSYGIFR*PIFNVLRLPVWKFSLCWTGGH 60
           SR N+ +  ++       + NVL   +WK ++ W  G+
Sbjct: 57  SRMNYFITHLALADLSVGLINVLTDIIWKTTVAWYAGN 94


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,551
Number of Sequences: 336
Number of extensions: 3791
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)