Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0953
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.54 
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    29   0.71 
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    28   1.6  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    28   1.6  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.2  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    27   2.2  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    27   2.2  
SPBC530.03c |bag102|bag1-b|BAG family molecular chaperone regula...    26   5.0  
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po...    26   5.0  
SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces p...    26   5.0  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    26   6.6  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   6.6  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    26   6.6  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    25   8.7  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   8.7  
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    25   8.7  
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi...    25   8.7  

>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = +3

Query: 360 DEVEYLEEDVTNNSQPEKDPITVCLTRPKKLPRAKPIKKYLQYTEEDLRNGVEAVRNNRM 539
           +E++ LEE V       K P+ +  T P ++    P  K +Q      RN + A R +  
Sbjct: 787 EEMKPLEEKVPIYRSSSKQPLRIHPTHPLRVTVCLPGSKTIQVARRSFRNSMNANRYDPQ 846

Query: 540 SR 545
            R
Sbjct: 847 RR 848


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +3

Query: 453 PRAKPIKKYLQY-TEEDLRNGVEAVRNNRMSRLEAAEFYNVPRKTLVAKLKMDEESVD 623
           P AK  +KYLQY   ED     +A++N    R+   E Y    +  VA+LK D E ++
Sbjct: 138 PSAKQQRKYLQYQISED-----DAIKNRMFRRMSDLESYPAVMRD-VAELKDDNERLN 189


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +3

Query: 72  PTKRKLPNRQAKNIENRLTKYAIGDPEKTMVVSRSKKILRIDTTNHNG 215
           P KR +    +  + N L K A  +P    VV+  KKILR++ T H+G
Sbjct: 53  PLKRPIAEYVSSGVIN-LDKPA--NPSSHEVVAWVKKILRVEKTGHSG 97


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 318 FLQRFLGFPLLRILFLAPKSVYLHPISRLRFCLK 217
           FLQRF    +L ++ L  K  YL     L FCL+
Sbjct: 111 FLQRFYAHAILFVMELFNKEQYLQSSKLLIFCLR 144



 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = +3

Query: 498 DLRNGVEAVRNNRMSRLEAAEFYNVPRKTLVAKLKMDEESVDPAREEMYVFI 653
           ++RN +E V  N     E     ++P+   V+K   D ES+     + ++F+
Sbjct: 64  NIRNNLEKVLQNSY---EFQSMVSLPKVDRVSKFLSDNESISQTSGDYFIFL 112


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -3

Query: 241 FSFKILFEIPL*FVVSIRKIFLLLDTTIV-FSGSPMAYFVNLFSMFFACLFGSFLF 77
           F F +LF +   F  S   +F L    IV FS  P+ +F+  F     C+F SFLF
Sbjct: 119 FFFFLLFFLSFSFSFSF--LFFLSQIFIVYFSSFPILHFL-FFFFLCVCVFLSFLF 171


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 20/76 (26%), Positives = 33/76 (43%)
 Frame = +3

Query: 462 KPIKKYLQYTEEDLRNGVEAVRNNRMSRLEAAEFYNVPRKTLVAKLKMDEESVDPAREEM 641
           K   KYL    E +  G E    +++ R   A FYN   K+ ++K   D   +    E+M
Sbjct: 85  KDFIKYLSLALESISMGKEPEYQDQLIRGCFAAFYNNINKSHISKQLKDSRKI----EDM 140

Query: 642 YVFIXGSKNITLISRM 689
           ++    S +  L  R+
Sbjct: 141 FLIFASSVSSELTKRL 156


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 165 QPSSSLGLLWHISLTYFQCSSLACLEV 85
           QP+S   L W I  TY + S+ +CL++
Sbjct: 605 QPTSVFDLCWTIKPTYEKSSNFSCLQL 631


>SPBC530.03c |bag102|bag1-b|BAG family molecular chaperone
           regulator|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 206

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
 Frame = +3

Query: 432 LTRPKKLPRAKPIKKYLQYTEEDLRNGVEA-VRNNRMSRLEAAEFYNVPRKTLVAK-LKM 605
           L  PK  P  + I+ Y+   ++DL   +EA  +++  S  +  + +    +TL+A+ +K+
Sbjct: 110 LELPKLSPAMQQIEAYIDELQQDLVPKIEAFCQSSPASAQDVQDLHTRLSETLLARMIKL 169

Query: 606 DEESVD 623
           D  +V+
Sbjct: 170 DAVNVE 175


>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 284

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 18/71 (25%), Positives = 39/71 (54%)
 Frame = +2

Query: 29  QTKRESRQKNNDHRSNKEKTSKQASEEH*K*VNEICHRRPREDDGCIEKQKNLTYRYYKS 208
           + KRE R+K++  + +K+KTS  ++ +  K + +I  ++ +E     +K K  + +  KS
Sbjct: 162 EAKREKRKKHSSKKKSKKKTSTGSALDP-KKLEKITKKKKKEHK---KKDKESSSKKRKS 217

Query: 209 QWDFKQNLKRE 241
               K+  K++
Sbjct: 218 GSSDKEEKKKK 228


>SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 407 RERSDNSLLNSAQETAPGQT 466
           RE  DN LLN + E  PGQT
Sbjct: 75  RENYDNRLLNISLEHLPGQT 94


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +3

Query: 417 PITVCLTRPKKLPRAKPIKKYLQYTEEDLRNGVEAVRNNRMSRLEAAEFYNVP 575
           P T  L +  K+P A  I+ Y    EED  + V  V +  +SR      Y  P
Sbjct: 215 PTTNSLLKKSKIPFALVIRPYTSLVEED--DPVPVVTDTIISRCRRCRMYINP 265


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 122 VNEICHRRPREDDGCIEKQKNLTY 193
           +N I + +   +D CI+K++NL Y
Sbjct: 617 INGIRYGKSHNEDTCIKKRRNLNY 640


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +3

Query: 81  RKLPNRQAKNIENRLTKYAIGDPEKTMVVSRSKKILRIDTTNHNGISNKILNE 239
           R+LP  Q + I+ R+ + A+G      + S   +IL+     +  I + +L E
Sbjct: 40  RELPYEQLERIQGRIARLALG---HNFIKSIGPEILKFTRLRYLNIRSNVLRE 89


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = -1

Query: 240 SRLRFCLKSHCDL*YLYVRFFCFSIQPSSSLGLLWHISLTY--FQCSSL 100
           S+  FC+K+  +    Y+  +     P   + L W IS  Y  F CSSL
Sbjct: 7   SKKSFCIKAPSNWEKSYLEVWPLVTVPRQCICLRWCISKEYHEFTCSSL 55


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 169  DTTIVFSGSPMAYFVNLFSM 110
            D T+V S +P  +FVN+ SM
Sbjct: 2689 DGTVVSSHNPFVFFVNVLSM 2708


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 7/112 (6%)
 Frame = +3

Query: 399 SQPEKDPITVCLTRPKKLPRAKPIKKYLQYTEEDLRNGVEAVR---NNRMSRLEAAEFY- 566
           S  EK      L  PK    +  +K    +     + G+E +     + + ++   + + 
Sbjct: 219 SPAEKALKAALLAEPKTAELSNSMKSTSMFA---FKEGIETITLSIADELKKMPNVKIHL 275

Query: 567 NVPRKTLVAKLKMDEESVDPAREEMYVFIXGSKNI-TLIS--RMRRPTKXKY 713
           N P KTLV         V+    E  VF   S+N+  LIS  +M  PT   Y
Sbjct: 276 NKPAKTLVPHKTQSLVDVNGQAYEYVVFANSSRNLENLISCPKMETPTSSVY 327


>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 615

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +3

Query: 75  TKRKLPNRQAKNIENRLTKYAIGDPEKTMVVSRSKKILRIDTTNHNGISNKI 230
           T +K  N  AKN+ +  +   +   ++   +  S  ILR D TN+N +S+ I
Sbjct: 15  TFQKNLNSVAKNVSDA-SNILLSMDKRLSGLEASAGILRDDVTNYNRVSSNI 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,965,967
Number of Sequences: 5004
Number of extensions: 62957
Number of successful extensions: 192
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)