Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0953
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0169 - 1346281-1349188,1350069-1350184                           33   0.24 
05_01_0384 + 2997465-2999777,2999960-3000035,3003027-3003102,300...    31   0.74 
10_08_0850 + 21050164-21050189,21050874-21050979,21051186-210512...    29   3.9  
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120...    29   5.2  
10_02_0150 - 5883942-5884328,5884573-5884677,5885219-5885311,588...    28   6.9  
04_04_1147 + 31261435-31261763,31261915-31262736,31262934-312629...    28   6.9  

>06_01_0169 - 1346281-1349188,1350069-1350184
          Length = 1007

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
 Frame = +3

Query: 456 RAKPIKKYLQYTEEDLRNGVEAVRNNRMSRLEAAEF--YNVPRKTLVAKLKMDEESVDPA 629
           R   IK     T +++ + +E VRN+  S ++ A+   ++ P+K L+ K+ MD    D  
Sbjct: 128 RYNSIKMEANNTFDEIES-MEDVRNHSRSNIDEAKLVGFDTPKKELLDKINMDANDDDHC 186

Query: 630 REEMYVFIXGSKNITLISRM 689
           R    V + G    TL+ ++
Sbjct: 187 RVLCVVGMGGLGKTTLVRKI 206


>05_01_0384 + 2997465-2999777,2999960-3000035,3003027-3003102,
            3003571-3004442,3004592-3004773,3005206-3005295,
            3005388-3005675,3005776-3005997,3006053-3006133,
            3006634-3006861
          Length = 1475

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +3

Query: 468  IKKYLQYTEE-DLRNGVEAVRNNRMSRLEAAEFYNVPRKTLVAKLKMDEESVDPARE 635
            + K+ Q TE+ DL   +EA+ N    ++E   + +   +TL+ K K  ++ +  AR+
Sbjct: 1239 VTKHTQGTEDSDLEKTIEALTNELEEKIEDMNYMDNMNQTLILKEKRSKDELQEARK 1295


>10_08_0850 + 21050164-21050189,21050874-21050979,21051186-21051257,
            21051775-21051828,21052077-21052184,21052653-21052802,
            21052914-21053258,21053361-21054801,21054844-21055675,
            21057060-21057325,21057530-21059603,21060172-21060442,
            21060556-21060990
          Length = 2059

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
 Frame = +3

Query: 132  YAIGDPEKTMVVSRSKK------ILRIDTTNHNGISNKILNEKLDEDKQTLV 269
            Y +   E+ MVV R K+       LRI   + NG+++ I N K+D   + LV
Sbjct: 1285 YGVVSLERMMVVLRLKEGLDILQFLRISKASTNGVTHSIGNFKIDSSTEVLV 1336


>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
            34512493-34513964,34514114-34514377,34514761-34514978,
            34515759-34516030,34516190-34516559,34516578-34516797,
            34516819-34518931,34518941-34519193,34519269-34519401,
            34520597-34521114,34521207-34522115,34522195-34522368,
            34522833-34522882,34523963-34524035,34524413-34524477,
            34524736-34525522,34525622-34525878,34525989-34526109,
            34526315-34526956
          Length = 5320

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +3

Query: 351  KTYDEVEYLEEDVTNNSQPEKD 416
            K+YDE++   ED TN++ P+K+
Sbjct: 2570 KSYDELKMFSEDSTNDAVPQKE 2591


>10_02_0150 -
           5883942-5884328,5884573-5884677,5885219-5885311,
           5885394-5885606,5886976-5887005
          Length = 275

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/72 (23%), Positives = 31/72 (43%)
 Frame = +3

Query: 339 GLEKKTYDEVEYLEEDVTNNSQPEKDPITVCLTRPKKLPRAKPIKKYLQYTEEDLRNGVE 518
           G  +   D +  +E  V   ++  KDP T        LP++  ++     + E  +N   
Sbjct: 138 GFNENAKDAIAQMEAYVAQPTEEGKDPKTPVEAVAHVLPKSTFLRNVGMQSTEMKKNAKA 197

Query: 519 AVRNNRMSRLEA 554
           A  N+R+  LE+
Sbjct: 198 AAMNDRVCELES 209


>04_04_1147 +
           31261435-31261763,31261915-31262736,31262934-31262970,
           31262987-31263028,31263092-31263179,31264344-31264486
          Length = 486

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 402 QPEKDPITVCLTRPKKLPRAKPIKKYLQYTEEDLR 506
           QP+   +   L + KK P   PIKK LQ + +D R
Sbjct: 23  QPQNVDLPELLPKKKKKPFPVPIKKMLQASRQDKR 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,494,125
Number of Sequences: 37544
Number of extensions: 385474
Number of successful extensions: 908
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)