Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0953
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0) 39 0.005
SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_40032| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_35073| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_35284| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_29494| Best HMM Match : Mpp10 (HMM E-Value=0.62) 29 5.3
SB_24438| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_46841| Best HMM Match : zf-AN1 (HMM E-Value=2.4) 28 7.0
SB_41786| Best HMM Match : AT_hook (HMM E-Value=0.24) 28 7.0
SB_51968| Best HMM Match : PT (HMM E-Value=0.54) 28 7.0
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022) 28 9.3
SB_32089| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)
Length = 1595
Score = 38.7 bits (86), Expect = 0.005
Identities = 28/83 (33%), Positives = 43/83 (51%)
Frame = +3
Query: 357 YDEVEYLEEDVTNNSQPEKDPITVCLTRPKKLPRAKPIKKYLQYTEEDLRNGVEAVRNNR 536
YD + ++ED + S P++D ++ P IKK+ ++EE +R +E V N
Sbjct: 61 YDSPK-IDEDSKSESPPKRDH--------QQSPSTMSIKKFKLWSEEQMRMAIEHVLNGM 111
Query: 537 MSRLEAAEFYNVPRKTLVAKLKM 605
R AAE + VPR TL +L M
Sbjct: 112 KIRA-AAEKFKVPRSTLGDRLLM 133
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +3
Query: 483 QYTEEDLRNGVEAVRNNRMSRLEAAEFYNVPRKTLVAKLKMDEESVD 623
+++EE + + A++ M AA + +P+ TL ++ +ES+D
Sbjct: 333 KWSEEKMEQALVAIKTEDMPIRVAARKFQIPKSTLYDRVNRGDESID 379
>SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 31.5 bits (68), Expect = 0.76
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 44 SRQKNNDHRSNKEKTSKQASEEH*K*VNEIC-HRRPREDDGCIEKQKNLTYRYYKSQ 211
SR K + H S++ KTS+ H +E H R R + E+ ++ T R+ KS+
Sbjct: 77 SRHKTSRHESSRHKTSRHGRSRHKTSRHETSRHERSRHETRQHERSRHKTSRHEKSR 133
>SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1653
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 38 RESRQKNNDHRSNKEKTSKQASEEH*K*VNEICHRRPREDD 160
RE R++ R ++E+ K+ ++ + E RRPREDD
Sbjct: 827 REDRERERREREDRERREKEEFDKRDRERREKDDRRPREDD 867
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/69 (23%), Positives = 34/69 (49%)
Frame = +2
Query: 35 KRESRQKNNDHRSNKEKTSKQASEEH*K*VNEICHRRPREDDGCIEKQKNLTYRYYKSQW 214
+RE R + + R ++++ ++ E+ + E RR RED +++ R K ++
Sbjct: 789 ERERRDREDRERRDRDERDRRDREDRERRDREDRERRDREDRERERREREDRERREKEEF 848
Query: 215 DFKQNLKRE 241
D + +RE
Sbjct: 849 DKRDRERRE 857
>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1913
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 378 EEDVTNNSQPEKD-PITVCLTRPKKLPRAKPIKKYL 482
E +VTN S+ + PI + +PK P+AKP K L
Sbjct: 1085 EAEVTNESEETSEMPIYAAVQKPKDKPKAKPKPKEL 1120
>SB_40032| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 628 HEKKCMYS*XEVKTLLSFHECDALQSXNIDLQLRLLH 738
HE K + S E K L+S HEC L S + L +H
Sbjct: 76 HECKVLMSIHECKVLMSIHECKVLMSIDECSVLMSIH 112
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 628 HEKKCMYS*XEVKTLLSFHECDALQSXNIDLQLRLLH 738
HE K + S E L+S HEC+ L S + L +H
Sbjct: 94 HECKVLMSIDECSVLMSIHECNVLMSIDECKLLMSIH 130
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 628 HEKKCMYS*XEVKTLLSFHECDALQSXNIDLQLRLLH 738
HE K + S E L+S HEC+ L S + L +H
Sbjct: 139 HECKVLMSIHECNVLMSMHECNVLMSIDECKLLMSIH 175
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 628 HEKKCMYS*XEVKTLLSFHECDALQSXNIDLQLRLLH 738
HE + S E K L+S HEC+ L S + L +H
Sbjct: 112 HECNVLMSIDECKLLMSIHECNVLMSIHECKVLMSIH 148
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 628 HEKKCMYS*XEVKTLLSFHECDALQS 705
HE + S E K L+S HEC+ L S
Sbjct: 130 HECNVLMSIHECKVLMSIHECNVLMS 155
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 628 HEKKCMYS*XEVKTLLSFHECDALQS 705
HE K + S E L+S HEC+ L S
Sbjct: 175 HECKLLMSIHECNVLMSIHECNVLMS 200
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 628 HEKKCMYS*XEVKTLLSFHECDALQS 705
HE K + S E L+S HEC+ L S
Sbjct: 211 HECKVLMSIYECNVLMSMHECNVLMS 236
>SB_35073| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 332
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = -3
Query: 250 SSNFSFKILFEIPL*FVVSIRKIFLLLDTTIVFSGSPMA--YFVNLFSMFFACLFGSFLF 77
+ ++ + ILF +PL FV+ K ++ P+A Y V F +F A G L
Sbjct: 146 AGSWIYAILFNLPLFFVIGYEKHGDDFRCPEKWTNKPLAELYTVGAFFIFGAIPIGIMLI 205
Query: 76 VGPVVI 59
V P++I
Sbjct: 206 VYPMII 211
>SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1266
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +3
Query: 453 PRAKPIKKYLQYTEEDLRNGVEAVRNNRMSRLEAAE 560
PR P++ Y++YTEEDL + + +M+ EAA+
Sbjct: 114 PRKPPVQ-YIKYTEEDLDDYIPYEDPKKMAEKEAAK 148
>SB_35284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 29.1 bits (62), Expect = 4.0
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Frame = +3
Query: 435 TRPKKLPRAK--PIKKYLQYTEEDLRNGVEAVRNN----RMSRLEAAEFYNVPRKTLVAK 596
++PKKL + ++K ++TE++L+ A +NN +MS+ + E Y KT A
Sbjct: 6 SKPKKLTDEEILELRKTTEFTEDELQKWFAAFKNNCPKGKMSQSKFCEMYAKSYKTGDAS 65
Query: 597 LKMDE--ESVDPAREEMYVFIXGSKNITLISRMRRPTKXKY 713
+ + D + F + +++ISR + TK ++
Sbjct: 66 IFAGHVFRTFDKNNDGTIDFNEFIQGLSIISRGSKETKLRW 106
>SB_29494| Best HMM Match : Mpp10 (HMM E-Value=0.62)
Length = 631
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +3
Query: 339 GLEKKTYDEVEYLEEDVTNNSQPEKDPITVCLTRPKKLPRAKPIKKYLQYTE 494
G E+K +EVE++E++ N+S+ EK+ + L P K +A K Y E
Sbjct: 245 GEEQKEEEEVEWVEKEKVNSSEIEKE--SSRLQSPNKGKQATVRNKLTIYAE 294
>SB_24438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 44 SRQKNNDHRSNKEKTSKQASEEH*K*VNEIC-HRRPREDDGCIEKQKNLTYRYYKSQ 211
SR K + H S++ KTS+ H +E H R R + E+ ++ T R+ S+
Sbjct: 37 SRHKTSRHESSRHKTSRHERSRHKTSRHETSRHERSRHETRQHERSRHKTSRHETSR 93
>SB_46841| Best HMM Match : zf-AN1 (HMM E-Value=2.4)
Length = 266
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 628 HEKKCMYS*XEVKTLLSFHECDALQSXNIDLQLRLLH 738
HE K + S E L+S HEC+ L S + L +H
Sbjct: 22 HECKVLMSIDECSVLMSIHECNVLMSIDECKLLMSIH 58
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 628 HEKKCMYS*XEVKTLLSFHECDALQSXNIDLQLRLLH 738
HE K + S E L+S HEC+ L S + L +H
Sbjct: 67 HECKVLMSIHECNVLMSMHECNVLMSIDECKLLMSIH 103
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 628 HEKKCMYS*XEVKTLLSFHECDALQSXNIDLQLRLLH 738
HE + S E K L+S HEC+ L S + L +H
Sbjct: 40 HECNVLMSIDECKLLMSIHECNVLMSIHECKVLMSIH 76
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 628 HEKKCMYS*XEVKTLLSFHECDALQS 705
HE + S E K L+S HEC+ L S
Sbjct: 58 HECNVLMSIHECKVLMSIHECNVLMS 83
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 628 HEKKCMYS*XEVKTLLSFHECDALQS 705
HE K + S E L+S HEC+ L S
Sbjct: 103 HECKLLMSIHECNVLMSIHECNVLMS 128
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 628 HEKKCMYS*XEVKTLLSFHECDALQS 705
HE K + S E L+S HEC+ L S
Sbjct: 139 HECKVLMSIYECNVLMSMHECNVLMS 164
>SB_41786| Best HMM Match : AT_hook (HMM E-Value=0.24)
Length = 324
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 393 NNSQPEKDPITVCLTRPKKLPRAKPIKKY-LQYTEEDLRNGVEAVRNNRMSR 545
++++P+ DP+ P K PR +P KK+ Q+ + V++ + R R
Sbjct: 32 SDNEPKDDPVAEQPVMPIKRPRGRPSKKWQAQFLGKVFPEPVKSAKKERKPR 83
>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
Length = 514
Score = 28.3 bits (60), Expect = 7.0
Identities = 36/130 (27%), Positives = 45/130 (34%), Gaps = 1/130 (0%)
Frame = +3
Query: 348 KKTYDEVEYLEEDVTNNSQPEKDPITVCLTRPKKLPRAKPIKKYLQYTEEDLRNGVEAVR 527
K EVE EE T +P K T P + P KP K L EE+ E
Sbjct: 268 KPLLPEVEPEEERAT--PRPTKAKPTTRKRMPTERPTKKPTKPLLPEEEEEEEEEEEERP 325
Query: 528 NNRMSRLEAAEFYNVPRKTLVAK-LKMDEESVDPAREEMYVFIXGSKNITLISRMRRPTK 704
R ++ + P + K K V+P EE T +PT
Sbjct: 326 TPRPTKAKPTAIIRKPTERPTKKPTKPLLPEVEPEEEE---------RATPRPTKAKPTT 376
Query: 705 XKYRPTAAPT 734
K RPT PT
Sbjct: 377 IKRRPTERPT 386
>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
Length = 1421
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 29 QTKRESRQKNNDHRSNKEKTSKQASEEH*K*VNEICH-RRPREDDGCIEKQKNL 187
Q KRE ++K + KEK +Q + K E+ RR +E+ +E+++ L
Sbjct: 1184 QKKREEKKKREEEMREKEKEMEQNKIDQEKRKQELMESRRFQEEQDRLEEERRL 1237
>SB_32089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = +2
Query: 128 EICHRRPREDDGCIEKQKNLTYRYYKSQWDFKQNLK 235
++C+ RPR ++K NL + + QW + ++ +
Sbjct: 65 QLCNERPRHSTAVLDKDGNLLSKKEEIQWRWTEHFR 100
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,584,468
Number of Sequences: 59808
Number of extensions: 447076
Number of successful extensions: 1242
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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