Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0953
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68010-2|CAA92010.2|  433|Caenorhabditis elegans Hypothetical pr...    39   0.004
AB236333-1|BAE45265.1|  433|Caenorhabditis elegans MBlk-1 Relate...    39   0.004
Z35663-11|CAA84732.2|  791|Caenorhabditis elegans Hypothetical p...    30   2.0  
AF077542-13|AAC26302.1|  294|Caenorhabditis elegans Hypothetical...    30   2.0  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    28   6.2  
AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical...    28   6.2  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    28   6.2  
AF000299-6|AAC47978.1|  297|Caenorhabditis elegans Hypothetical ...    28   8.1  

>Z68010-2|CAA92010.2|  433|Caenorhabditis elegans Hypothetical
           protein T01C1.2 protein.
          Length = 433

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
 Frame = +3

Query: 342 LEKKTYDEVEYLEEDVTNNSQPEKDPITVCLTRP--KKLPRAKPIKKYLQYTEEDLRNGV 515
           L  KT + ++ +   V N+    +D  +V   +P  + L ++  +++   YT EDL   V
Sbjct: 108 LSNKTMNMLQKI--GVFNSVTKSEDDESVAPEKPVDESLNKSNILRR--NYTVEDLTQAV 163

Query: 516 EAVRNNRMSRLEAAEFYNVPRKTLVAKL-KMDEESVDPAR 632
           E +R  ++    A+  Y +PR TL  K+ K++ E   P++
Sbjct: 164 EDIRQGKLGTRRASVVYGIPRSTLRNKIYKLEAEGAIPSK 203


>AB236333-1|BAE45265.1|  433|Caenorhabditis elegans MBlk-1 Related
           factor-1 protein.
          Length = 433

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
 Frame = +3

Query: 342 LEKKTYDEVEYLEEDVTNNSQPEKDPITVCLTRP--KKLPRAKPIKKYLQYTEEDLRNGV 515
           L  KT + ++ +   V N+    +D  +V   +P  + L ++  +++   YT EDL   V
Sbjct: 108 LSNKTMNMLQKI--GVFNSVTKSEDDESVAPEKPVDESLNKSNILRR--NYTVEDLTQAV 163

Query: 516 EAVRNNRMSRLEAAEFYNVPRKTLVAKL-KMDEESVDPAR 632
           E +R  ++    A+  Y +PR TL  K+ K++ E   P++
Sbjct: 164 EDIRQGKLGTRRASVVYGIPRSTLRNKIYKLEAEGAIPSK 203


>Z35663-11|CAA84732.2|  791|Caenorhabditis elegans Hypothetical
           protein T04A8.13 protein.
          Length = 791

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 29  QTKRESRQKNNDHRSNKEKTSKQASEEH*K*VNEICHRRPREDD 160
           + K+E +++  D +  KEKT     +E  K   E     P++DD
Sbjct: 139 EKKKEKKEEKKDEKEKKEKTEDDKEKEKEKTKEEKVKEDPKKDD 182


>AF077542-13|AAC26302.1|  294|Caenorhabditis elegans Hypothetical
           protein Y57G7A.10a protein.
          Length = 294

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 348 KKTYDEVEYLEEDVTNNSQPEKDPITVCLTRPKKLPRAKPIKKYLQ 485
           +K  D  E L ED  NN+   K  + V L + K+L   + I  YL+
Sbjct: 103 QKALDIYERLVEDEPNNNSFRKRKVAVLLAQGKRLDAIRAINDYLK 148


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 588  LKSSSERYRTRPLLI*TSCCF*LPPRHSSGPLRCIEG 478
            ++S   + +T+ L I   C F   P+H+SG +R IEG
Sbjct: 1331 MRSGCPKEQTKKLFILMKCLF---PKHNSGYMRFIEG 1364


>AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical
            protein Y111B2A.14 protein.
          Length = 1481

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/44 (22%), Positives = 23/44 (52%)
 Frame = +2

Query: 29   QTKRESRQKNNDHRSNKEKTSKQASEEH*K*VNEICHRRPREDD 160
            + + +  Q+  + +  KE+  ++  E   + + EI  R+ RE+D
Sbjct: 995  EERMKKEQEKQEEKERKEREKREEKERKEREIREIMERKKREED 1038


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 588  LKSSSERYRTRPLLI*TSCCF*LPPRHSSGPLRCIEG 478
            ++S   + +T+ L I   C F   P+H+SG +R IEG
Sbjct: 1331 MRSGCPKEQTKKLFILMKCLF---PKHNSGYMRFIEG 1364


>AF000299-6|AAC47978.1|  297|Caenorhabditis elegans Hypothetical
           protein E03H12.2 protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 306 FLGFPLLRILFLAPKSVYLHPISRLRFCLK-SHCDL 202
           F G+P   I F  P+S  +H  S +  CLK ++C L
Sbjct: 4   FWGYPASSIKFCEPQSTIIHFDSCINLCLKETYCML 39


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,464,752
Number of Sequences: 27780
Number of extensions: 362984
Number of successful extensions: 1283
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)