Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0953
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             35   0.001
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          31   0.009
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   3.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.1  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   9.3  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   9.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 34.7 bits (76), Expect = 0.001
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +3

Query: 486 YTEEDLRNGVEAVRNNRMSRLEAAEFYNVPRKTL---VAKLKMDEE 614
           YTEE+L+  +  +++ ++    AA  Y +PR TL   V KL M+ E
Sbjct: 591 YTEEELQAALRDIQSGKLGTRRAAVIYGIPRSTLRNKVYKLAMERE 636


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 31.5 bits (68), Expect = 0.009
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +3

Query: 486 YTEEDLRNGVEAVRNNRMSRLEAAEFYNVPRKTL 587
           +T+ED+   +EA+RN+ MS  +A+  + +P  TL
Sbjct: 411 WTQEDMDAALEALRNHDMSLTKASATFGIPSTTL 444



 Score = 29.9 bits (64), Expect = 0.027
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 486 YTEEDLRNGVEAVRNNRMSRLEAAEFYNVPRKTLVAKLK 602
           ++E+ +   +EAVR   MS  +AA  YN+P  +L  + K
Sbjct: 572 WSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFK 610


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 543 RLEAAEFYNVPRKTLVAKLKMDEESVDPAREEMYVFIXGSKNIT 674
           RLE  E ++  +KT    +K++   V P+R + +  I  +  I+
Sbjct: 508 RLETKELFSSQQKTKNNLMKLETTPVLPSRFQSHPSIDSANTIS 551


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 345 EKKTYDEVEYLEEDVTNNSQPEKDPITV 428
           EKK  DE++  +E  T  SQ  KD  TV
Sbjct: 212 EKKKEDEIDEGKESKTKLSQWRKDGGTV 239


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 716 TYSCAYCTEVY 748
           ++SC YC +VY
Sbjct: 16  SFSCKYCEKVY 26


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/43 (18%), Positives = 22/43 (51%)
 Frame = +3

Query: 144 DPEKTMVVSRSKKILRIDTTNHNGISNKILNEKLDEDKQTLVP 272
           +P  T   + S+K +++   N + +    +++  D D+  ++P
Sbjct: 389 EPSTTTSTTISQKHIKVFVVNKDILHEHNVDDNEDHDENMIIP 431


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,726
Number of Sequences: 438
Number of extensions: 4193
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)