Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0953
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g56660.1 68414.m06516 expressed protein 33 0.27
At3g61510.1 68416.m06889 1-aminocyclopropane-1-carboxylate synth... 29 2.5
At3g14360.1 68416.m01817 lipase class 3 family protein low simil... 29 2.5
At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 ... 29 4.4
At3g24260.1 68416.m03047 hypothetical protein 29 4.4
At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zi... 29 4.4
At5g64070.1 68418.m08046 phosphatidylinositol 4-kinase (PI4K) ne... 28 5.8
At5g14440.1 68418.m01690 surfeit locus 2 protein-related / SURF2... 28 5.8
At5g09350.1 68418.m01083 phosphatidylinositol 4-kinase, putative... 28 5.8
At5g20830.1 68418.m02474 sucrose synthase / sucrose-UDP glucosyl... 28 7.6
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 32.7 bits (71), Expect = 0.27
Identities = 18/75 (24%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Frame = +2
Query: 32 TKRESRQKNNDHRSNKEKTSKQASEEH*K*VNEICHRRPR---EDDGCIEKQKN--LTYR 196
T++E + DH+ K+K +K +++ ++E+C + + +D+G +++KN +
Sbjct: 310 TEQEMDDEAADHKEGKKKKNKDKAKKKETVIDEVCEKETKDKDDDEGETKQKKNKKKEKK 369
Query: 197 YYKSQWDFKQNLKRE 241
K + D K++ K+E
Sbjct: 370 SEKGEKDVKEDKKKE 384
Score = 29.1 bits (62), Expect = 3.3
Identities = 46/204 (22%), Positives = 76/204 (37%), Gaps = 6/204 (2%)
Frame = +3
Query: 72 PTKRKLPNRQAKNIENRLTKYAIGDPEKTMVVSRSKKILRIDTTNHN----GISNKILNE 239
P K K ++ E++ K G EK KK D T +K +
Sbjct: 267 PDKEKKEKDESTEKEDKKLKGKKGKGEKPEKEDEGKKTKEHDATEQEMDDEAADHKEGKK 326
Query: 240 KLDEDKQTLVPKI--EFLEVESQXXXXXXXXXXXXGLEKKTYDEVEYLEEDVTNNSQPEK 413
K ++DK + E E E++ +KK + E E+DV + + E
Sbjct: 327 KKNKDKAKKKETVIDEVCEKETKDKDDDEGETKQKKNKKKE-KKSEKGEKDVKEDKKKEN 385
Query: 414 DPITVCLTRPKKLPRAKPIKKYLQYTEEDLRNGVEAVRNNRMSRLEAAEFYNVPRKTLVA 593
T ++R KL + KK TEE ++ VE + + + + +K
Sbjct: 386 PLETEVMSRDIKLEEPEAEKKEEDDTEEKKKSKVEGGESEEGKKKKKKDKKKNKKKD-TK 444
Query: 594 KLKMDEESVDPAREEMYVFIXGSK 665
+ KM E+ + + V I GSK
Sbjct: 445 EPKMTEDEEEKKDDSKDVKIEGSK 468
>At3g61510.1 68416.m06889 1-aminocyclopropane-1-carboxylate
synthase, putative / ACC synthase, putative similar to
ACC synthases from Citrus sinensis [GI:6434142], Cucumis
melo [GI:695402], Cucumis sativus [GI:3641645]
Length = 488
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 14 CSC*CQTKRESRQKNNDHRSNKEKTSKQASEEH 112
C+C C KRE++++ + ++ K S EEH
Sbjct: 440 CNCICNNKRENKKRKSFQKNLKLSLSSMRYEEH 472
>At3g14360.1 68416.m01817 lipase class 3 family protein low
similarity to Chain A, Lipase Ii From Rhizopus Niveus
GI:1942798; contains Pfam profile PF01764: Lipase
Length = 518
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3
Query: 199 VSIRKIFLLLDTTIVFSGSPMAYFVNLFS 113
+ +RKI LL T + F+G + +F+NLFS
Sbjct: 76 ILVRKIIRLLRTPMEFTGFVVDFFLNLFS 104
>At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3
Pfam PF00400: WD domain, G-beta repeats;
Length = 1327
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 119 IFNVLRLPVWKFSLCWTGGHYFSVYFLFWF 30
+ VL + WK + +TGGH S+Y L F
Sbjct: 112 VIRVLSMITWKLARRYTGGHKGSIYCLMNF 141
>At3g24260.1 68416.m03047 hypothetical protein
Length = 374
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +3
Query: 375 LEEDVTNNSQPEKDPITVCLTRPKKLPRAKPIKKYLQYTEEDLRNGVEA 521
L + ++ +PE++PI L PK +PR + + K E +++ +EA
Sbjct: 48 LNRKIDHDEKPEENPIL--LNEPKMIPRIRIVYKPKDDVERKMKDRLEA 94
>At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 634
Score = 28.7 bits (61), Expect = 4.4
Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 1/121 (0%)
Frame = +3
Query: 222 NKILN-EKLDEDKQTLVPKIEFLEVESQXXXXXXXXXXXXGLEKKTYDEVEYLEEDVTNN 398
NKIL EK + KQ L ++E E++ + G++KK E LEE +
Sbjct: 399 NKILQLEKELDSKQKL--QMEIQELKGKLKVMKHEDEDDEGIKKKMKKMKEELEEKCSEL 456
Query: 399 SQPEKDPITVCLTRPKKLPRAKPIKKYLQYTEEDLRNGVEAVRNNRMSRLEAAEFYNVPR 578
E + + K +K+L +L + +R RM LE F R
Sbjct: 457 QDLEDTNSALMVKERKSNDEIVEARKFLITELRELVSDRNIIRVKRMGELEEKPFMTACR 516
Query: 579 K 581
+
Sbjct: 517 Q 517
>At5g64070.1 68418.m08046 phosphatidylinositol 4-kinase (PI4K) nearly
identical to gi:4467359
Length = 1121
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -1
Query: 183 FFCFSIQPSS--SLGLLWHISLTYFQCSSLACLEVFSLLDRW 64
F CF P + +L +H+SLT QC SL + S LD W
Sbjct: 1064 FPCFKGGPRTIQNLRKRFHLSLTEEQCVSLVLSLISSSLDAW 1105
>At5g14440.1 68418.m01690 surfeit locus 2 protein-related / SURF2
protein-related contains weak hit to Pfam profile
PF05477: Surfeit locus protein 2 (SURF2)
Length = 291
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/70 (25%), Positives = 33/70 (47%)
Frame = +2
Query: 29 QTKRESRQKNNDHRSNKEKTSKQASEEH*K*VNEICHRRPREDDGCIEKQKNLTYRYYKS 208
+ K++ ++KNN + NK+ K+ + E +EI H E+D +E++
Sbjct: 141 EDKKKKKKKNNKKKKNKKSVEKKKNGEDV--ADEIEH----ENDEAVEEELEFWMPPDGE 194
Query: 209 QWDFKQNLKR 238
+WDF R
Sbjct: 195 RWDFDDGRDR 204
>At5g09350.1 68418.m01083 phosphatidylinositol 4-kinase, putative
strong similarity to gi:4467359
Length = 1116
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -1
Query: 183 FFCFSIQPSS--SLGLLWHISLTYFQCSSLACLEVFSLLDRW 64
F CF P + +L +H+SLT QC SL + S LD W
Sbjct: 1059 FPCFKGGPRTIQNLRKRFHLSLTEEQCVSLVLSLISSSLDAW 1100
>At5g20830.1 68418.m02474 sucrose synthase / sucrose-UDP
glucosyltransferase (SUS1) identical to SP|P49040
Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP
glucosyltransferase) {Arabidopsis thaliana}
Length = 808
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Frame = +3
Query: 210 NGIS--NKILNEKLDEDKQTLVPKIEFLEVES 299
NG+ N+ L+ KL DK++L+P ++FL + S
Sbjct: 157 NGVDFLNRHLSAKLFHDKESLLPLLKFLRLHS 188
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,367,570
Number of Sequences: 28952
Number of extensions: 328583
Number of successful extensions: 921
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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