Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0951
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...    90   1e-19
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...    89   2e-19
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    81   8e-17
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    29   0.27 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   1.9  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    25   3.3  
SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr 1|||...    25   5.7  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    25   5.7  
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    24   7.6  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    24   7.6  

>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 89.8 bits (213), Expect = 1e-19
 Identities = 46/99 (46%), Positives = 59/99 (59%)
 Frame = +3

Query: 102 SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERD 281
           SK+    PES+LK            +    +++++  KK+  I KRAE Y  EYR  ER+
Sbjct: 10  SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAERE 69

Query: 282 EIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVR 398
           +I L R+AR  GNYYVP E KL FVIRIRGIN + PK R
Sbjct: 70  QIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKAR 108


>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 89.0 bits (211), Expect = 2e-19
 Identities = 44/92 (47%), Positives = 57/92 (61%)
 Frame = +3

Query: 123 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQ 302
           PES+LK            +    +++S+  KK+  I KRAE Y  EYR  ER++I LAR+
Sbjct: 16  PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARK 75

Query: 303 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVR 398
           AR  GNY+VP E KL FV+RIRGIN + PK R
Sbjct: 76  ARAEGNYFVPHEPKLIFVVRIRGINNIPPKAR 107


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 80.6 bits (190), Expect = 8e-17
 Identities = 36/92 (39%), Positives = 56/92 (60%)
 Frame = +3

Query: 123 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQ 302
           PE +LK            ++  + ++ +  K ++E FKRAE ++  YR +ER+ IRL R 
Sbjct: 15  PEVLLKKRKVNERTRKERVEQAIAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRS 74

Query: 303 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVR 398
           A+N+G+ +VP E KL FVIRI G+  + PK+R
Sbjct: 75  AKNKGDIFVPDETKLLFVIRIAGVKNMPPKIR 106


>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 29.1 bits (62), Expect = 0.27
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = +3

Query: 204 SAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGN 320
           +++K+ REI ++ E+    +R+K ++  ++ + A N GN
Sbjct: 151 TSLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +3

Query: 237 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 338
           +A Q   ++ +     +RL     N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = +1

Query: 85  SKGRKTVRSCLLYQSQCSSIVRGERLFALGDYRLR*RGVLLPSRRRGKSSRGLNSTSR 258
           S+G+   ++C L+Q+ C    R  R   +   +    G+ LP +   K   G  S  R
Sbjct: 18  SRGQPRCQTCTLFQADCHYSNRARRKRLVQRSKETFGGITLPVKNIEKPEDGEESVQR 75


>SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 292 SLISSRSLMRYSLTYCSALLKISLFFLM 209
           SLI+ RS     + YC A L   LF+L+
Sbjct: 203 SLINRRSKQDKIIFYCGAFLVFVLFYLI 230


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -1

Query: 235 LKISLFFLMAEERLFSVTCNLLVRRASLLLRCLSTDSGTAGSFLLSSFPL 86
           LK +   L +E  + + + NL+V+    +L      + T G FL SS P+
Sbjct: 239 LKKAFTKLFSEPTMVNKSINLIVQARQQILSTAYLTALTRGDFLSSSRPI 288


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 319 LPRLRACLASLISSRSLMRYSLTYCSALLKISLFFLM 209
           L  L   L S   SR+L R  L+YC  L   S+ +LM
Sbjct: 367 LTDLSVILLSGSFSRNLERVHLSYCIGLTAKSVSYLM 403


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -3

Query: 353 KCQFGFPGNVVVATIACLSG*SDFITFLDAVFLDVLFSPLEDFP 222
           KC   F  N     I CL     +I+ LDA   DV F+ ++D P
Sbjct: 262 KC-LTFVPNSPERCIRCLQFIKPYISSLDATEDDVDFTEVDDIP 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,340,822
Number of Sequences: 5004
Number of extensions: 21806
Number of successful extensions: 60
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)