Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0951
         (400 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814...    85   3e-17
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351...    79   1e-15
10_06_0101 + 10736987-10737100,10737263-10737301,10737397-107374...    30   0.77 
03_02_0651 + 10183050-10184167,10184350-10184974,10185023-101852...    27   4.1  
03_06_0596 + 34964109-34964189,34964286-34964481,34964567-349647...    27   7.2  
07_03_0123 - 13688562-13689146,13689233-13689583,13689665-136898...    26   9.5  

>08_01_0835 +
           8147177-8147359,8147871-8147968,8148045-8148102,
           8148192-8148271,8148770-8148872,8148966-8149181
          Length = 245

 Score = 84.6 bits (200), Expect = 3e-17
 Identities = 41/97 (42%), Positives = 59/97 (60%)
 Frame = +3

Query: 108 KLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 287
           K   VPESVLK             +  L  +  A++ ++ IF RA+QY +EY  +E++ +
Sbjct: 7   KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELV 66

Query: 288 RLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVR 398
           +L R+AR +G +YV  EAKL FV+RIRGIN + PK R
Sbjct: 67  QLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTR 103


>04_04_1075 +
           30634141-30634320,30634917-30635014,30635113-30635170,
           30635259-30635338,30635686-30635788,30635847-30636080
          Length = 250

 Score = 79.4 bits (187), Expect = 1e-15
 Identities = 37/93 (39%), Positives = 57/93 (61%)
 Frame = +3

Query: 120 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 299
           VPESVL+             +  +  +  +I+ ++ IF RA+QY +EY  +E++ ++L R
Sbjct: 10  VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKR 69

Query: 300 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVR 398
           +AR +G +YV  E KL FV+RIRGIN + PK R
Sbjct: 70  EARMKGGFYVSPEEKLLFVVRIRGINAMHPKTR 102


>10_06_0101 +
           10736987-10737100,10737263-10737301,10737397-10737474,
           10737539-10737685,10737781-10737888,10738115-10738449,
           10738572-10739544,10739702-10739980
          Length = 690

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +3

Query: 186 TLKRRSSAIKKKREIF--KRAEQYVKE-YRIKERDEIRLARQARNRGNYY 326
           TL+ R+  IK KRE+F  KR E  ++E  ++ +  E+ +   A NR   +
Sbjct: 149 TLETRTDPIKLKREVFRRKRKEHRIQELLQVDKEAELHMRNVATNRSRNF 198


>03_02_0651 +
           10183050-10184167,10184350-10184974,10185023-10185208,
           10185325-10185660
          Length = 754

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 310 IVATTTFPGKPNWHLSSESVVSTKFH 387
           +V    +P   NWHLSS S +  K H
Sbjct: 573 VVLNDLYPKCSNWHLSSTSYLQAKRH 598


>03_06_0596 +
           34964109-34964189,34964286-34964481,34964567-34964775,
           34964868-34964970,34965053-34965227,34965617-34965883,
           34965966-34966311,34966396-34966533,34966645-34966770,
           34966866-34967078,34967171-34967462,34967559-34967755,
           34967844-34968194,34968290-34968874
          Length = 1092

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +3

Query: 213 KKKREIFKRAEQYVKEYRIKERDE 284
           KKKR  FKRAE     Y + E DE
Sbjct: 689 KKKRLFFKRAENQSPAYALGEIDE 712


>07_03_0123 -
           13688562-13689146,13689233-13689583,13689665-13689861,
           13689954-13690072,13690103-13690245,13690332-13690544,
           13690649-13690774,13690891-13691028,13691109-13691454,
           13691532-13691798,13691939-13691983,13692148-13692349,
           13692405-13692507,13692599-13692810,13692891-13693113,
           13693211-13693291
          Length = 1116

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 213 KKKREIFKRAEQYVKEYRIKERDE 284
           KKKR  FKRAE     Y + E +E
Sbjct: 713 KKKRSFFKRAENQSPAYALGEIEE 736


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,926,289
Number of Sequences: 37544
Number of extensions: 148900
Number of successful extensions: 377
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)