Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0951
(400 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32) 107 2e-24
SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.4
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37) 28 3.2
SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29) 27 4.3
SB_17925| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_39493| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-09) 27 5.6
SB_12133| Best HMM Match : DUF827 (HMM E-Value=0.64) 27 5.6
SB_33165| Best HMM Match : ABC_tran (HMM E-Value=0) 27 7.4
SB_16163| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045) 26 9.8
SB_5458| Best HMM Match : E-MAP-115 (HMM E-Value=0.3) 26 9.8
SB_50229| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
Length = 245
Score = 107 bits (258), Expect = 2e-24
Identities = 53/101 (52%), Positives = 69/101 (68%)
Frame = +3
Query: 96 EDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKE 275
+D K+P VPE++LK + L ++ K++EIFKRAE+YVKEYR KE
Sbjct: 3 QDRVKVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEKYVKEYRQKE 62
Query: 276 RDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVR 398
DE+R+ + A+ GN+YVP EA+LAFVIRIRGIN VSPKVR
Sbjct: 63 VDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSPKVR 103
>SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 72
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 198 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 323
R AI ++RE+++R E Y + + R+ R R R Y
Sbjct: 16 RRRAINRRREMYRRREMYRRREMYRRREMYRRREMYRRREMY 57
>SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 77
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 198 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 323
R + ++REI++R E Y + + R+ RL R R Y
Sbjct: 27 RRREMYRRREIYRRREMYRRREMYRRREMYRLREMYRRREMY 68
>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
Length = 712
Score = 27.9 bits (59), Expect = 3.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 270 KERDEIRLARQARNRGNYYVP 332
K RD +AR+ R+RG YY+P
Sbjct: 483 KIRDTSSIARETRSRGPYYLP 503
>SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29)
Length = 482
Score = 27.5 bits (58), Expect = 4.3
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Frame = +3
Query: 81 PVKGKEDSKKLP--AVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYV 254
P K KE SK + AV +S+LK + T ++ AI KKR + +Y+
Sbjct: 305 PAK-KESSKHIEKNAVKKSILKAPKRNAKKAATDAEQTTTKK--AIDKKRRRYNSRRRYI 361
Query: 255 KEYRIKERDEIRLARQARNR 314
+ R R R R R
Sbjct: 362 RRRRFTSRRRATRRRYTRRR 381
>SB_17925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1075
Score = 27.1 bits (57), Expect = 5.6
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -1
Query: 292 SLISSRSLMRYSLTYCSALLKISLFFLMAEERLFSVTCNLLVRRASLLLRCLSTDS 125
SL SR+ M Y LK++L L+ ++ L S C+L R ++ +S D+
Sbjct: 142 SLAISRNQMELFGLYAGMRLKVALVGLIYKKILNSSRCSLSTVRTGHVINLISNDA 197
>SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1981
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 288 RLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVR 398
RL R + R NYY+ + +AF + I + + P R
Sbjct: 1886 RLRRTEKRRQNYYIATQKLMAFALNIYEVLKDDPLTR 1922
>SB_39493| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-09)
Length = 310
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 348 PIWLPRERSSCHDCVLVWLV*FHHVP 271
P+ P E S C CVL WL ++ P
Sbjct: 28 PLMAPCEHSYCSACVLGWLTHYNTCP 53
>SB_12133| Best HMM Match : DUF827 (HMM E-Value=0.64)
Length = 325
Score = 27.1 bits (57), Expect = 5.6
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 177 LQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRG 317
L+ L+ R I+K AE+ +K R+KE D I + +RG
Sbjct: 219 LRQALRERDRLIEKINSAVMSAEEQLKVRRLKEDDSIDQLSRHEHRG 265
>SB_33165| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1310
Score = 26.6 bits (56), Expect = 7.4
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = -1
Query: 280 SRSLMRYSLTYCSALLKISLFFLMAEERLFSVTCNLLVRRASLLLRCLSTDSGTAGSFLL 101
SR+ M Y LK++L L+ ++ L S C+L R ++ +S D+ F +
Sbjct: 146 SRNQMELFGLYAGMRLKVALIGLIYKKILNSSRCSLSTVRTGYVINLISNDAKRIELF-I 204
Query: 100 SSFPL 86
S+F +
Sbjct: 205 SNFSM 209
>SB_16163| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 853
Score = 26.6 bits (56), Expect = 7.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 219 KREIFKRAEQYVKEYRIKERDEIRLARQAR 308
K+E KR E+ KE R KER E R++R
Sbjct: 701 KKENMKRQEKEEKEKRAKERAEKEKERKSR 730
>SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 26.6 bits (56), Expect = 7.4
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -1
Query: 190 SVTCNLLVRRASLLLRCLSTDSG 122
SVTCNL + L RC S DSG
Sbjct: 13 SVTCNLDITDGYLNARCNSQDSG 35
>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
Length = 2506
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 192 KRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNR 314
K R IKK+ KR EQ+ KE + K+ +++ + R +
Sbjct: 132 KDRIKYIKKQESDLKRREQWQKEMKQKKDEQVDEREKQREK 172
>SB_5458| Best HMM Match : E-MAP-115 (HMM E-Value=0.3)
Length = 274
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 192 KRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNR 314
K R IKK+ KR EQ+ KE + K+ +++ + R +
Sbjct: 136 KDRIKYIKKQESDLKRREQWQKEMKQKKDEQVDEREKQREK 176
>SB_50229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1719
Score = 26.2 bits (55), Expect = 9.8
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +3
Query: 201 SSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVI 359
+ AI ++E E+ K R K D++RL++ R Y+P + F I
Sbjct: 640 AEAITGEKETTTTREKKKKSPRFKVGDQVRLSKVKRTFTKGYLPNWTEEVFTI 692
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,245,565
Number of Sequences: 59808
Number of extensions: 176157
Number of successful extensions: 512
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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