Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0951
(400 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal pro... 93 9e-20
U41106-1|AAA82409.1| 347|Caenorhabditis elegans Hypothetical pr... 31 0.40
Z83238-7|CAB05797.1| 313|Caenorhabditis elegans Hypothetical pr... 28 2.8
Z73910-2|CAA98138.1| 248|Caenorhabditis elegans Hypothetical pr... 27 5.0
U05038-1|AAA61872.1| 248|Caenorhabditis elegans 14-3-3 protein ... 27 5.0
AL132948-21|CAC51051.2| 453|Caenorhabditis elegans Hypothetical... 27 5.0
Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical p... 27 6.5
Z66564-5|CAC42300.2| 198|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z66564-2|CAA91474.1| 248|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z32683-1|CAA83621.1| 812|Caenorhabditis elegans Hypothetical pr... 26 8.7
>AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7 protein.
Length = 244
Score = 92.7 bits (220), Expect = 9e-20
Identities = 45/99 (45%), Positives = 65/99 (65%)
Frame = +3
Query: 102 SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERD 281
+KK+P VPE+VLK Q + + +KK + FKRAE+YV+EYR +++
Sbjct: 4 TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKE 63
Query: 282 EIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVR 398
+RL R+A +G++YVP E K+AFV+RIRGINQ+ PK R
Sbjct: 64 GLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPR 102
>U41106-1|AAA82409.1| 347|Caenorhabditis elegans Hypothetical
protein W06A11.4 protein.
Length = 347
Score = 30.7 bits (66), Expect = 0.40
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +1
Query: 214 RRRGKSSRGLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKF 384
++R K SR SR ASR +K K A +T P +PN + S S S ++
Sbjct: 21 KKRRKMSRKFTKKSRKRASRASIKLANEQKAKKYANSTVPMEPNVYTDSGSPFSNRY 77
>Z83238-7|CAB05797.1| 313|Caenorhabditis elegans Hypothetical
protein T08G3.8 protein.
Length = 313
Score = 27.9 bits (59), Expect = 2.8
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = -1
Query: 262 YSLTYCSALLKISLFFLMAEERLFSVTCNLLVRRASLLLRCLSTDSGTAGSFLLSSFPLT 83
YS+ L+K+S +FL + + +S + ++ R ++++ ++ FL+ PLT
Sbjct: 24 YSMPTVYILIKLSYYFLYRKNKCYSTDLHPVLFRQFMIMQ-IACFFNVCIKFLIFRIPLT 82
Query: 82 G 80
G
Sbjct: 83 G 83
>Z73910-2|CAA98138.1| 248|Caenorhabditis elegans Hypothetical
protein M117.2 protein.
Length = 248
Score = 27.1 bits (57), Expect = 5.0
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 204 SAIKKKREIFKRAEQYVKEYRIKERDEI 287
S+I++K E ++ +Q KEYR+K E+
Sbjct: 65 SSIEQKTEGSEKKQQLAKEYRVKVEQEL 92
>U05038-1|AAA61872.1| 248|Caenorhabditis elegans 14-3-3 protein
protein.
Length = 248
Score = 27.1 bits (57), Expect = 5.0
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 204 SAIKKKREIFKRAEQYVKEYRIKERDEI 287
S+I++K E ++ +Q KEYR+K E+
Sbjct: 65 SSIEQKTEGSEKKQQLAKEYRVKVEQEL 92
>AL132948-21|CAC51051.2| 453|Caenorhabditis elegans Hypothetical
protein Y39B6A.29 protein.
Length = 453
Score = 27.1 bits (57), Expect = 5.0
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 193 FSVTCNLLVRRASLLLRCLSTDSGTAGSFLLSSF 92
F TC+ L ++ L L L T GT+ SF LS F
Sbjct: 238 FKQTCSALTSKSMLQLFPLFTVLGTSSSFWLSIF 271
>Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical protein
C47E8.8 protein.
Length = 1675
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 237 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIR 368
R +Q VKE I++R +LA NY + ++ FV+ ++
Sbjct: 1149 RMKQNVKEECIRQRFMSKLAPIIHRLDNYSIEARVRIIFVLSVK 1192
>Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical
protein C47E8.8 protein.
Length = 1675
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 237 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIR 368
R +Q VKE I++R +LA NY + ++ FV+ ++
Sbjct: 1149 RMKQNVKEECIRQRFMSKLAPIIHRLDNYSIEARVRIIFVLSVK 1192
>Z66564-5|CAC42300.2| 198|Caenorhabditis elegans Hypothetical
protein F52D10.3b protein.
Length = 198
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 204 SAIKKKREIFKRAEQYVKEYRIKERDEIR 290
S+I++K E ++ +Q KEYR K E+R
Sbjct: 65 SSIEQKTEGSEKKQQMAKEYREKVEKELR 93
>Z66564-2|CAA91474.1| 248|Caenorhabditis elegans Hypothetical
protein F52D10.3a protein.
Length = 248
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 204 SAIKKKREIFKRAEQYVKEYRIKERDEIR 290
S+I++K E ++ +Q KEYR K E+R
Sbjct: 65 SSIEQKTEGSEKKQQMAKEYREKVEKELR 93
>Z32683-1|CAA83621.1| 812|Caenorhabditis elegans Hypothetical
protein R07E5.1 protein.
Length = 812
Score = 26.2 bits (55), Expect = 8.7
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 6/47 (12%)
Frame = +3
Query: 180 QVTLKRRSSAIKKKREIFKRAEQYVK---EYRIKE---RDEIRLARQ 302
Q LK+R +K++REI ++ E+ + E +KE RD +R+++Q
Sbjct: 673 QEILKKREEDLKRRREIVEKKEEENRKRVEKELKELENRDLLRVSKQ 719
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,480,104
Number of Sequences: 27780
Number of extensions: 123086
Number of successful extensions: 411
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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