Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0951
(400 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 85 2e-17
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 85 2e-17
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 83 9e-17
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 83 9e-17
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 83 9e-17
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 81 3e-16
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 55 2e-08
At3g52860.1 68416.m05825 expressed protein 30 0.65
At5g38830.1 68418.m04697 tRNA synthetase class I (C) family prot... 29 0.86
At3g21370.1 68416.m02698 glycosyl hydrolase family 1 protein con... 28 2.6
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 27 3.5
At2g39300.1 68415.m04825 expressed protein ; expression supporte... 27 4.6
At1g33970.1 68414.m04212 avirulence-responsive protein, putative... 27 4.6
At1g26540.1 68414.m03234 agenet domain-containing protein contai... 27 4.6
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 84.6 bits (200), Expect = 2e-17
Identities = 41/93 (44%), Positives = 57/93 (61%)
Frame = +3
Query: 120 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 299
VPESVLK + + +++ ++ IFKRAEQY KEY K+ + IRL R
Sbjct: 13 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 72
Query: 300 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVR 398
+A+ +G +YV EAKL F+IRIRGIN + PK +
Sbjct: 73 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTK 105
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 84.6 bits (200), Expect = 2e-17
Identities = 41/93 (44%), Positives = 57/93 (61%)
Frame = +3
Query: 120 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 299
VPESVLK + + +++ ++ IFKRAEQY KEY K+ + IRL R
Sbjct: 8 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 67
Query: 300 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVR 398
+A+ +G +YV EAKL F+IRIRGIN + PK +
Sbjct: 68 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTK 100
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 82.6 bits (195), Expect = 9e-17
Identities = 42/100 (42%), Positives = 60/100 (60%)
Frame = +3
Query: 99 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 278
+++ VPESVLK Q + +K++ IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 279 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVR 398
+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK +
Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTK 102
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 82.6 bits (195), Expect = 9e-17
Identities = 42/100 (42%), Positives = 60/100 (60%)
Frame = +3
Query: 99 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 278
+++ VPESVLK Q + +K++ IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 279 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVR 398
+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK +
Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTK 102
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 82.6 bits (195), Expect = 9e-17
Identities = 42/100 (42%), Positives = 60/100 (60%)
Frame = +3
Query: 99 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 278
+++ VPESVLK Q + +K++ IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 279 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVR 398
+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK +
Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTK 102
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 81.0 bits (191), Expect = 3e-16
Identities = 42/93 (45%), Positives = 55/93 (59%)
Frame = +3
Query: 120 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 299
VPESVLK Q + + ++ IFKRAEQY KEY KE++ I L R
Sbjct: 8 VPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKELISLKR 67
Query: 300 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVR 398
+A+ +G +YV EAKL F+IRIRGIN + PK +
Sbjct: 68 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTK 100
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 55.2 bits (127), Expect = 2e-08
Identities = 33/102 (32%), Positives = 51/102 (50%)
Frame = +3
Query: 93 KEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIK 272
+E++K L +PE VLK + S KKK KR E +V E+R K
Sbjct: 3 EEEAKGLDYIPEIVLKKRKNRDELAFIRKKQLELGNSGKKKKKVSDIKRPEDFVHEFRAK 62
Query: 273 ERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVR 398
E D IR+ ++ + + P ++ L F+IRI+G N + PK +
Sbjct: 63 EVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTK 104
>At3g52860.1 68416.m05825 expressed protein
Length = 156
Score = 29.9 bits (64), Expect = 0.65
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 177 LQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 287
++ LK + IKK +F+ +++ VKE K RDE+
Sbjct: 117 MEEELKTKDELIKKHMRLFQESQKLVKEQIEKHRDEL 153
>At5g38830.1 68418.m04697 tRNA synthetase class I (C) family protein
similar to SP|Q06752 Cysteinyl-tRNA synthetase (EC
6.1.1.16) (Cysteine--tRNA ligase) (CysRS) {Bacillus
subtilis}; contains Pfam profile PF01406: tRNA
synthetases class I (C)
Length = 511
Score = 29.5 bits (63), Expect = 0.86
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Frame = +1
Query: 118 LYQSQCSSIVRGERLFALG---DYRLR*RGVLLPSRRRGKSSRGLNSTSRNTASRNVMKS 288
+ + C +V G+ F++ +Y + G LL R G+ ++S RN A + K+
Sbjct: 134 IIEKDCGYVVEGDVFFSVDKSPNYG-KLSGQLLEHTRAGERV-AVDSRKRNPADFALWKA 191
Query: 289 D*PDKHAIVATTTFPGKPNWHLSSESV 369
PD+ + + PG+P WH+ ++
Sbjct: 192 AKPDEPSWESPWG-PGRPGWHIECSAM 217
>At3g21370.1 68416.m02698 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to beta-glucosidase (GI:757740) [Brassica
napus]; similar to beta-glucosidase GB:AAB64244 from
[Arabidopsis thaliana], (Plant Mol. Biol. 34 (1), 57-68
(1997))
Length = 527
Score = 27.9 bits (59), Expect = 2.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 326 RSRGSQIGICHPNPWYQPSFTEG 394
+ +G +IGI H W++P EG
Sbjct: 263 KCKGGKIGIAHSPAWFEPEDVEG 285
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 27.5 bits (58), Expect = 3.5
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = +1
Query: 238 GLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHR 390
G + T R+ +R + SD K+ V+ T GK HLS E VS F R
Sbjct: 407 GASVTPRSIKARRALLSD---KNEKVSVTERNGKLGTHLSDEISVSEGFRR 454
>At2g39300.1 68415.m04825 expressed protein ; expression supported
by MPSS
Length = 768
Score = 27.1 bits (57), Expect = 4.6
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +3
Query: 93 KEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIK 272
+ED +++ + +LK L+ L RRSS K E FK E+ ++E R++
Sbjct: 324 REDIRRVKNDWDLLLKRLEKEKTELQVQLETELDRRSSEWTSKVESFKVEEKRLRE-RVR 382
Query: 273 ERDEIRLARQ 302
E E ++ Q
Sbjct: 383 ELAEHNVSLQ 392
>At1g33970.1 68414.m04212 avirulence-responsive protein, putative /
avirulence induced gene protein, putative / AIG protein,
putative similar to SP|P54120 AIG1 protein {Arabidopsis
thaliana}; contains Pfam profile PF04548: AIG1 family
Length = 342
Score = 27.1 bits (57), Expect = 4.6
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +3
Query: 192 KRRSSAIKKKREIFKRAEQYVKEYRIK 272
KR S IKK RE +RAE+ KE + K
Sbjct: 309 KRSSDEIKKLRENLERAEKETKELQKK 335
>At1g26540.1 68414.m03234 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 695
Score = 27.1 bits (57), Expect = 4.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 388 GETWLIPRIRMTNANLASPGT 326
G TW+ P I +N ++ SPGT
Sbjct: 138 GGTWIQPEIEESNKSMFSPGT 158
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,173,309
Number of Sequences: 28952
Number of extensions: 119886
Number of successful extensions: 362
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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