Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0950
         (350 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24395| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.4  
SB_39042| Best HMM Match : SNF (HMM E-Value=2.7e-17)                   26   9.9  
SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.9  
SB_4492| Best HMM Match : PPI_Ypi1 (HMM E-Value=3.8)                   26   9.9  

>SB_24395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 887

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -3

Query: 252 SNISSLINHCPSKILILQVFLSFSQ 178
           S+++ +++ C  KI +L+ FLSFSQ
Sbjct: 197 SSVTHMLDTCKRKIPVLRPFLSFSQ 221


>SB_39042| Best HMM Match : SNF (HMM E-Value=2.7e-17)
          Length = 285

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 19  RYLYLPTVFLDFISVYVCRFKSSQQI*KYLDYTST*LNYPYWS 147
           R+  + T+ L ++ VY C FKS +   K   Y +T +   YWS
Sbjct: 181 RWELVGTLILSWVLVYFCIFKSVRLTGKVWVYAATQI---YWS 220


>SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1576

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +1

Query: 4   LCR*CRYLYLP--TVFLDFISVYVCR 75
           LCR CRY Y     + + +IS+ +CR
Sbjct: 607 LCRACRYYYFVHLAITVSYISLLLCR 632


>SB_4492| Best HMM Match : PPI_Ypi1 (HMM E-Value=3.8)
          Length = 276

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 255 STLEQWIGQK*HQVPCQSS*XF 320
           ST + W+GQ+  Q P QSS  F
Sbjct: 235 STTQWWLGQELEQAPSQSSDSF 256


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,737,963
Number of Sequences: 59808
Number of extensions: 115250
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)