Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0950
         (350 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73103-4|CAA97426.1|  585|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z50006-2|CAD44148.1|  523|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>Z73103-4|CAA97426.1|  585|Caenorhabditis elegans Hypothetical
           protein C08F8.5 protein.
          Length = 585

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 52  FISVYVCRFKSSQQI*KYLDYTST 123
           F+  Y C +KSSQ I K+L + +T
Sbjct: 79  FLDFYNCTYKSSQFIHKFLIHNTT 102


>Z50006-2|CAD44148.1|  523|Caenorhabditis elegans Hypothetical
           protein T07C5.1c protein.
          Length = 523

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 133 NLIMYLCSLSIFKFVVNS*IYTRK 62
           +L  YLC +S+  FVV   I+ RK
Sbjct: 497 DLFFYLCIISLLNFVVYRKIFKRK 520


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,856,714
Number of Sequences: 27780
Number of extensions: 86761
Number of successful extensions: 145
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)