Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0949
         (350 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    28   0.49 
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    26   2.0  
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   3.4  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    24   7.9  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    24   7.9  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    24   7.9  
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    24   7.9  
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    24   7.9  

>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 27.9 bits (59), Expect = 0.49
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 243 ESG*LLQIAWSSTGDASFKCAALSTFDGSFCDYHG 347
           E G   Q++W++T      C A     G FCD +G
Sbjct: 119 EFGKFSQVSWTATA-YMISCTAFQPLFGKFCDIYG 152


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -2

Query: 322 SKVDKAAHLKDASPVLDHAICKSYPDSSKLTTSXARPSVDWF*SNKS 182
           S V+K+  + ++S VLDH + +      ++  S   P + W  S+KS
Sbjct: 90  SSVEKSTTIPNSSVVLDHLLNEGENTLEEVKPSEIHPHMSW--SSKS 134


>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +2

Query: 68  NGSIYQFWFLRSYSVTWITVVILELIHAIRTLTSD 172
           N  IY+ +F  ++S++ + + I  L   +RT++SD
Sbjct: 14  NTQIYRIFFTLTFSLSNLFLAICYLFLNVRTVSSD 48


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 328 LPSKVDKAAHLKDASPVLDHAICKSYPDSSKLTTSXARPS 209
           +P  VD A+H+  +SP         +P SS   +S   PS
Sbjct: 119 VPVDVDVASHVNISSPSAPSLSDNLFPGSSFSASSQQNPS 158


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 68  NGSIYQFWFLRSYSVTWITVVILEL 142
           NG + +F+FL S ++ W+   +LE+
Sbjct: 22  NGKMKEFFFLVSETMDWLNEHMLEV 46


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -2

Query: 292 DASPVLDHAICK--SYPDSSKLTTSXARPSV 206
           +ASPVLD  +C   S  + +  T S  +PS+
Sbjct: 101 NASPVLDQKVCNSDSLSELNDFTKSLIQPSM 131


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 106 LSYLDNCGNSRANTC 150
           ++YLD   NSR NTC
Sbjct: 75  VNYLDETPNSRYNTC 89


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 251 ITFADRMVKYRRRIFQMCCLIN 316
           IT+ D+ VK+    F+  CL+N
Sbjct: 684 ITYGDKQVKFDVEPFRKHCLVN 705


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,359,650
Number of Sequences: 5004
Number of extensions: 23314
Number of successful extensions: 51
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)